develop merge

[jalview.git] / src / jalview / ws / dbsources / GeneDbSource.java

diff --git a/src/jalview/ws/dbsources/GeneDbSource.java b/src/jalview/ws/dbsources/GeneDbSource.java
index 116962b..ce21ad0 100644 (file)
--- a/src/jalview/ws/dbsources/GeneDbSource.java
+++ b/src/jalview/ws/dbsources/GeneDbSource.java
@@ -22,7 +22,6 @@ package jalview.ws.dbsources;
 
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.DBRefSource;
-import jalview.ws.seqfetcher.DbSourceProxy;
 
 import com.stevesoft.pat.Regex;
 
@@ -32,13 +31,12 @@ import com.stevesoft.pat.Regex;
  * @author JimP
  * 
  */
-public class GeneDbSource extends EmblXmlSource implements DbSourceProxy
+public class GeneDbSource extends EmblXmlSource
 {
 
   public GeneDbSource()
   {
-    addDbSourceProperty(DBRefSource.DNASEQDB);
-    addDbSourceProperty(DBRefSource.CODINGSEQDB);
+    super();
   }
 
   /*
@@ -46,6 +44,7 @@ public class GeneDbSource extends EmblXmlSource implements DbSourceProxy
    * 
    * @see jalview.ws.DbSourceProxy#getAccessionSeparator()
    */
+  @Override
   public String getAccessionSeparator()
   {
     // TODO Auto-generated method stub
@@ -57,6 +56,7 @@ public class GeneDbSource extends EmblXmlSource implements DbSourceProxy
    * 
    * @see jalview.ws.DbSourceProxy#getAccessionValidator()
    */
+  @Override
   public Regex getAccessionValidator()
   {
     // TODO Auto-generated method stub
@@ -68,6 +68,7 @@ public class GeneDbSource extends EmblXmlSource implements DbSourceProxy
    * 
    * @see jalview.ws.DbSourceProxy#getDbSource()
    */
+  @Override
   public String getDbSource()
   {
     return DBRefSource.GENEDB;
@@ -78,6 +79,7 @@ public class GeneDbSource extends EmblXmlSource implements DbSourceProxy
    * 
    * @see jalview.ws.DbSourceProxy#getDbVersion()
    */
+  @Override
   public String getDbVersion()
   {
     // TODO Auto-generated method stub
@@ -89,6 +91,7 @@ public class GeneDbSource extends EmblXmlSource implements DbSourceProxy
    * 
    * @see jalview.ws.DbSourceProxy#getSequenceRecords(java.lang.String[])
    */
+  @Override
   public AlignmentI getSequenceRecords(String queries) throws Exception
   {
     // query of form
@@ -102,6 +105,7 @@ public class GeneDbSource extends EmblXmlSource implements DbSourceProxy
    * 
    * @see jalview.ws.DbSourceProxy#isValidReference(java.lang.String)
    */
+  @Override
   public boolean isValidReference(String accession)
   {
     // TODO Auto-generated method stub
@@ -111,11 +115,13 @@ public class GeneDbSource extends EmblXmlSource implements DbSourceProxy
   /**
    * return T.Brucei Mannosyl-Transferase TbPIG-M
    */
+  @Override
   public String getTestQuery()
   {
     return "Tb927.6.3300";
   }
 
+  @Override
   public String getDbName()
   {
     return "GeneDB"; // getDbSource();