merge from 2_4_Release branch

[jalview.git] / src / jalview / ws / dbsources / PfamSeed.java

diff --git a/src/jalview/ws/dbsources/PfamSeed.java b/src/jalview/ws/dbsources/PfamSeed.java
index e0e2b4f..5cde798 100644 (file)
--- a/src/jalview/ws/dbsources/PfamSeed.java
+++ b/src/jalview/ws/dbsources/PfamSeed.java
@@ -1,5 +1,20 @@
-/**\r
+/*\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)\r
+ * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * \r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
  * \r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+ * GNU General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
  */\r
 package jalview.ws.dbsources;\r
 \r
@@ -7,8 +22,9 @@ import jalview.ws.seqfetcher.DbSourceProxy;
 \r
 /**\r
  * flyweight class specifying retrieval of Seed alignments from PFAM\r
+ * \r
  * @author JimP\r
- *\r
+ * \r
  */\r
 public class PfamSeed extends Pfam implements DbSourceProxy\r
 {\r
@@ -17,7 +33,9 @@ public class PfamSeed extends Pfam implements DbSourceProxy
     super();\r
   }\r
 \r
-  /* (non-Javadoc)\r
+  /*\r
+   * (non-Javadoc)\r
+   * \r
    * @see jalview.ws.dbsources.Pfam#getPFAMURL()\r
    */\r
   protected String getPFAMURL()\r
@@ -25,20 +43,24 @@ public class PfamSeed extends Pfam implements DbSourceProxy
     return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&format=stockholm&order=t&case=l&gaps=default&entry=";\r
   }\r
 \r
-  /* (non-Javadoc)\r
+  /*\r
+   * (non-Javadoc)\r
+   * \r
    * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()\r
    */\r
   public String getDbName()\r
   {\r
     return "PFAM (Seed)";\r
   }\r
+\r
   public String getDbSource()\r
   {\r
     return jalview.datamodel.DBRefSource.PFAM; // archetype source\r
   }\r
+\r
   public String getTestQuery()\r
   {\r
-    return "PF00535";\r
+    return "PF03760";\r
   }\r
 \r
 }\r