*/
package jalview.ws.dbsources;
+import jalview.bin.Cache;
import jalview.datamodel.DBRefSource;
import com.stevesoft.pat.Regex;
*/
abstract public class Rfam extends Xfam
{
+ private static final String RFAM_DOMAIN_KEY = "RFAM_DOMAIN";
+
+ private static final String DEFAULT_RFAM_DOMAIN = "http://rfam.xfam.org";
+
+ @Override
+ protected String getDomain()
+ {
+ return Cache.getDefault(RFAM_DOMAIN_KEY, DEFAULT_RFAM_DOMAIN);
+ }
public Rfam()
{
@Override
public String getAccessionSeparator()
{
- // TODO Auto-generated method stub
return null;
}
@Override
public Regex getAccessionValidator()
{
- // TODO Auto-generated method stub
return null;
}
@Override
public String getDbVersion()
{
- // TODO Auto-generated method stub
return null;
}
- /**
- * Returns base URL for selected Rfam alignment type
- *
- * @return RFAM URL stub for this DbSource
- */
- @Override
- protected abstract String getXFAMURL();
-
/*
* (non-Javadoc)
*