Merge branch 'bug/JAL-2864nullOverviewCanvas' into develop

[jalview.git] / src / jalview / ws / dbsources / Uniprot.java
diff --git a/src/jalview/ws/dbsources/Uniprot.java b/src/jalview/ws/dbsources/Uniprot.java

index d44b104..167cd97 100644 (file)
--- a/src/jalview/ws/dbsources/Uniprot.java
+++ b/src/jalview/ws/dbsources/Uniprot.java
@@ -309,14 +309,17 @@ public class Uniprot extends DbSourceProxyImpl
      /*
       * append variant in standard format if present
       * e.g. p.Arg59Lys
+     * multiple variants are split over lines using <br>
       */
+    boolean asHtml = false;
      if (orig != null && !orig.isEmpty() && variants != null
              && !variants.isEmpty())
      {
        int p = 0;
        for (String var : variants)
        {
-        // TODO proper HGVC nomenclature for delins structural variations
+        // TODO proper HGVS nomenclature for delins structural variations
+        // http://varnomen.hgvs.org/recommendations/protein/variant/delins/
          // for now we are pragmatic - any orig/variant sequence longer than
          // three characters is shown with single-character notation rather than
          // three-letter notation
@@ -355,7 +358,8 @@ public class Uniprot extends DbSourceProxyImpl
          }
          if (++p != variants.size())
          {
-          sb.append("\n");
+          sb.append("<br/>&nbsp;&nbsp;");
+          asHtml = true;
          }
          else
          {
@@ -368,6 +372,11 @@ public class Uniprot extends DbSourceProxyImpl
      {
        sb.append(description);
      }
+    if (asHtml)
+    {
+      sb.insert(0, "<html>");
+      sb.append("</html>");
+    }
  
      return sb.toString();
    }