formatting

[jalview.git] / src / jalview / ws / jws1 / JPredThread.java

diff --git a/src/jalview/ws/jws1/JPredThread.java b/src/jalview/ws/jws1/JPredThread.java
index 88e6a71..22545ac 100644 (file)
--- a/src/jalview/ws/jws1/JPredThread.java
+++ b/src/jalview/ws/jws1/JPredThread.java
@@ -197,7 +197,8 @@ class JPredThread extends JWS1Thread implements WSClientI
           {
             // Adjust input view for gaps
             // propagate insertions into profile
-            alcsel = ColumnSelection.propagateInsertions(profileseq, al, input);
+            alcsel = ColumnSelection.propagateInsertions(profileseq, al,
+                    input);
           }
         }
       }
@@ -255,7 +256,6 @@ class JPredThread extends JWS1Thread implements WSClientI
       }
     }
 
-
     public JPredJob(Hashtable SequenceInfo, SequenceI seq, int[] delMap)
     {
       super();
@@ -268,7 +268,9 @@ class JPredThread extends JWS1Thread implements WSClientI
         sequence = new vamsas.objects.simple.Sequence();
         sequence.setId(seq.getName());
         sequence.setSeq(sq);
-      } else {
+      }
+      else
+      {
         errorMessage = "Sequence is too short to predict with JPred - need at least 20 amino acids.";
       }
     }
@@ -286,10 +288,12 @@ class JPredThread extends JWS1Thread implements WSClientI
         }
       }
     }
-    String errorMessage="";
+
+    String errorMessage = "";
+
     public String getValidationMessages()
     {
-      return errorMessage+"\n";
+      return errorMessage + "\n";
     }
   }
 
@@ -319,7 +323,9 @@ class JPredThread extends JWS1Thread implements WSClientI
       jobs = new WSJob[]
       { job };
       job.setJobnum(0);
-    } else {
+    }
+    else
+    {
       wsInfo.appendProgressText(job.getValidationMessages());
     }
   }
@@ -337,7 +343,9 @@ class JPredThread extends JWS1Thread implements WSClientI
       { job };
       OutputHeader = wsInfo.getProgressText();
       job.setJobnum(0);
-    } else {
+    }
+    else
+    {
       wsInfo.appendProgressText(job.getValidationMessages());
     }
   }