JAL-976 fix AACon name typo in source and GUI

[jalview.git] / src / jalview / ws / jws2 / JabawsAlignCalcWorker.java

diff --git a/src/jalview/ws/jws2/JabawsAlignCalcWorker.java b/src/jalview/ws/jws2/JabawsAlignCalcWorker.java
index f0bac08..99fc8a3 100644 (file)
--- a/src/jalview/ws/jws2/JabawsAlignCalcWorker.java
+++ b/src/jalview/ws/jws2/JabawsAlignCalcWorker.java
@@ -77,7 +77,7 @@ public abstract class JabawsAlignCalcWorker extends AlignCalcWorker
   }
 
   /**
-   * reconfigure and restart the AAConsClient. This method will spawn a new
+   * reconfigure and restart the AAConClient. This method will spawn a new
    * thread that will wait until any current jobs are finished, modify the
    * parameters and restart the conservation calculation with the new values.
    * 
@@ -172,7 +172,7 @@ public abstract class JabawsAlignCalcWorker extends AlignCalcWorker
         {
           finished = true;
         }
-        if (calcMan.isPending(this) && this instanceof AAConsClient)
+        if (calcMan.isPending(this) && this instanceof AAConClient)
         {
           finished = true;
           // cancel this job and yield to the new job
@@ -429,8 +429,8 @@ public abstract class JabawsAlignCalcWorker extends AlignCalcWorker
         }
       }
       // try real hard to return something submittable
-      // TODO: some of AAcons measures need a minimum of two or three amino
-      // acids at each position, and aacons doesn't gracefully degrade.
+      // TODO: some of AAcon measures need a minimum of two or three amino
+      // acids at each position, and AAcon doesn't gracefully degrade.
       for (int p = 0; p < seqs.size(); p++)
       {
         FastaSequence sq = seqs.get(p);