import jalview.api.AlignCalcWorkerI;
import jalview.bin.Cache;
import jalview.gui.AlignFrame;
-import jalview.gui.Desktop;
import jalview.gui.JvSwingUtils;
-import jalview.gui.WsJobParameters;
import jalview.util.MessageManager;
import jalview.ws.jws2.dm.AAConSettings;
import jalview.ws.jws2.dm.JabaWsParamSet;
import jalview.ws.jws2.jabaws2.Jws2Instance;
import jalview.ws.params.ArgumentI;
-import jalview.ws.params.ParamDatastoreI;
import jalview.ws.params.WsParamSetI;
import jalview.ws.uimodel.AlignAnalysisUIText;
*/
public abstract class Jws2Client extends jalview.ws.WSClient
{
- protected WsParamSetI preset;
-
- protected List<ArgumentI> paramset;
-
public Jws2Client(AlignFrame _alignFrame, WsParamSetI preset,
List<ArgumentI> arguments)
{
- alignFrame = _alignFrame;
- this.preset = preset;
+ super(_alignFrame, preset, arguments);
if (preset != null)
{
if (!((preset instanceof JabaPreset)
}
else
{
- // just provided with a bunch of arguments
- this.paramset = arguments;
+ // TODO: verify that paramset is compatible with the service being
+ // contacted
}
}
- boolean processParams(Jws2Instance sh, boolean editParams)
- {
- return processParams(sh, editParams, false);
- }
-
- protected boolean processParams(Jws2Instance sh, boolean editParams,
- boolean adjustingExisting)
- {
-
- if (editParams)
- {
- if (sh.paramStore == null)
- {
- sh.paramStore = new JabaParamStore(sh,
- Desktop.getUserParameterStore());
- }
- WsJobParameters jobParams = (preset == null && paramset != null
- && paramset.size() > 0)
- ? new WsJobParameters((ParamDatastoreI) null, sh,
- (WsParamSetI) null,
- JabaParamStore.getJwsArgsfromJaba(paramset))
- : new WsJobParameters((ParamDatastoreI) null, sh,
- preset,
- (List<ArgumentI>) null);
- if (adjustingExisting)
- {
- jobParams.setName(MessageManager
- .getString("label.adjusting_parameters_for_calculation"));
- }
- if (!jobParams.showRunDialog())
- {
- return false; // dialog cancelled
- }
-
- WsParamSetI prset = jobParams.getPreset();
- if (prset == null)
- {
- paramset = jobParams.isServiceDefaults() ? null
- : JabaParamStore
- .getJabafromJwsArgs(jobParams.getJobParams());
- this.preset = null;
- }
- else
- {
- this.preset = prset; // ((JabaPreset) prset).p;
- paramset = null; // no user supplied parameters.
- }
- }
- return true;
-
- }
-
public Jws2Client()
{
// anonymous constructor - used for headless method calls only