JAL-3066 JAL-3070 pull up non-jabaws specific service descriptor components for annot...

[jalview.git] / src / jalview / ws / jws2 / jabaws2 / Jws2InstanceFactory.java

diff --git a/src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java b/src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java
index 7c8395f..c328670 100644 (file)
--- a/src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java
+++ b/src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java
@@ -20,9 +20,6 @@
  */
 package jalview.ws.jws2.jabaws2;
 
-import jalview.ws.jws2.AAConClient;
-import jalview.ws.jws2.JPred301Client;
-import jalview.ws.jws2.RNAalifoldClient;
 import jalview.ws.uimodel.AlignAnalysisUIText;
 
 import java.util.HashMap;
@@ -38,7 +35,8 @@ public class Jws2InstanceFactory
 
   private static String category_rewrite(String cat_name)
   {
-    return (cat_name != null && cat_name.equals("Prediction")) ? "Secondary Structure Prediction"
+    return (cat_name != null && cat_name.equals("Prediction"))
+            ? "Secondary Structure Prediction"
             : cat_name;
   }
 
@@ -46,16 +44,13 @@ public class Jws2InstanceFactory
   {
     if (aaConGUI == null)
     {
-      aaConGUI = new HashMap<String, AlignAnalysisUIText>();
+      aaConGUI = new HashMap<>();
       aaConGUI.put(compbio.ws.client.Services.AAConWS.toString(),
-              AAConClient.getAlignAnalysisUITest());
+              AAConClient.getAlignAnalysisUIText());
       aaConGUI.put(compbio.ws.client.Services.RNAalifoldWS.toString(),
-              RNAalifoldClient.getAlignAnalysisUITest());
-      // disable the JPred301 client in jalview ...
-      ignoreGUI = new HashSet<String>();
-      ignoreGUI.add(compbio.ws.client.Services.JpredWS.toString());
-      aaConGUI.put(compbio.ws.client.Services.JpredWS.toString(),
-              JPred301Client.getAlignAnalysisUITest());
+              RNAalifoldClient.getAlignAnalysisUIText());
+      // ignore list for JABAWS services not supported in jalview ...
+      ignoreGUI = new HashSet<>();
     }
   }
 
@@ -90,7 +85,7 @@ public class Jws2InstanceFactory
     init();
     Jws2Instance svc = new Jws2Instance(jwsservers, serviceType,
             category_rewrite(name), description, service);
-    svc.aaui = aaConGUI.get(serviceType.toString());
+    svc.setAlignAnalysisUI(aaConGUI.get(serviceType.toString()));
     return svc;
   }