JAL-3210 Barebones gradle/buildship/eclipse. See README

[jalview.git] / src / jalview / ws / sifts / SiftsClient.java

diff --git a/src/jalview/ws/sifts/SiftsClient.java b/src/jalview/ws/sifts/SiftsClient.java
index 5050c34..d065666 100644 (file)
--- a/src/jalview/ws/sifts/SiftsClient.java
+++ b/src/jalview/ws/sifts/SiftsClient.java
@@ -71,8 +71,8 @@ import javax.xml.bind.Unmarshaller;
 import javax.xml.stream.XMLInputFactory;
 import javax.xml.stream.XMLStreamReader;
 
-import MCview.Atom;
-import MCview.PDBChain;
+import mc_view.Atom;
+import mc_view.PDBChain;
 
 public class SiftsClient implements SiftsClientI
 {
@@ -690,6 +690,13 @@ public class SiftsClient implements SiftsClientI
             ++nonObservedShiftIndex;
           }
         }
+        if (currSeqIndex == UNASSIGNED)
+        {
+          // change in logic - unobserved residues with no currSeqIndex
+          // corresponding are still counted in both nonObservedShiftIndex and
+          // pdbeIndex...
+          continue;
+        }
         // if (currSeqIndex >= seq.getStart() && currSeqIndex <= seqlength) //
         // true
                                                                          // numbering