package jalview.ws.slivkaws;
-import java.io.ByteArrayInputStream;
-import java.io.ByteArrayOutputStream;
-import java.io.IOError;
-import java.io.IOException;
-import java.io.InputStream;
-import java.util.Arrays;
-import java.util.EnumMap;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Optional;
-import java.util.Set;
-
-import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceI;
import jalview.gui.WebserviceInfo;
-import jalview.io.DataSourceType;
import jalview.io.FileFormat;
import jalview.io.FormatAdapter;
import jalview.ws.api.JalviewServiceEndpointProviderI;
import jalview.ws.params.ParamManager;
import jalview.ws.params.WsParamSetI;
+import java.io.ByteArrayInputStream;
+import java.io.ByteArrayOutputStream;
+import java.io.IOError;
+import java.io.IOException;
+import java.io.InputStream;
+import java.util.Arrays;
+import java.util.EnumMap;
+import java.util.HashSet;
+import java.util.List;
+import java.util.Optional;
+import java.util.Set;
+
import uk.ac.dundee.compbio.slivkaclient.FieldType;
import uk.ac.dundee.compbio.slivkaclient.FileField;
import uk.ac.dundee.compbio.slivkaclient.FormField;
}
return store;
}
-
- public static AlignmentI readAlignment(RemoteFile f) throws IOException
- {
- final var mimetype = f.getMimeType();
- FileFormat format;
- if (mimetype == "application/clustal")
- format = FileFormat.Clustal;
- else if (mimetype == "application/fasta")
- format = FileFormat.Fasta;
- else
- return null;
- return new FormatAdapter().readFile(f.getURL().toString(),
- DataSourceType.URL, format);
- }
}