import java.util.Objects;
import javax.swing.DefaultListModel;
+import javax.swing.table.DefaultTableModel;
import org.json.simple.JSONObject;
return defaultListModel;
}
+ public static DefaultTableModel getTableModel(PDBSearchRequest request,
+ Collection<PDBResponseSummary> summariesList)
+ {
+ DefaultTableModel model = new DefaultTableModel();
+
+ if (request.getAssociatedSequence() != null)
+ {
+ model.addColumn("Sequence");
+ }
+ for (PDBDocField field : request.getWantedFields())
+ {
+ model.addColumn(field.getName());
+ }
+
+ for (PDBResponseSummary res : summariesList)
+ {
+ model.addRow(res.getSummaryColums());
+ }
+ return model;
+ }
+
+
+
public class PDBResponseSummary
{
private String pdbId;
- private String summary;
+ private String summaryRow;
+
+ private String[] summaryColums;
+
+ private String associatedSequence;
private int width = 480;
- public PDBResponseSummary(JSONObject doc, List<PDBDocField> diplayFields)
+ public PDBResponseSummary(JSONObject doc,
+ List<PDBDocField> diplayFields, String associatedSeq)
{
StringBuilder summaryBuilder = new StringBuilder();
+ int colCounter = 0;
+ summaryColums = new String[(associatedSeq != null) ? diplayFields
+ .size() + 1 : diplayFields.size()];
+ if (associatedSeq != null)
+ {
+ this.associatedSequence = (associatedSeq.length() > 18) ? associatedSeq
+ .substring(0, 18) : associatedSeq;
+ summaryColums[0] = associatedSequence;
+ colCounter = 1;
+ }
+
for (PDBDocField field : diplayFields)
{
if (field.equals(PDBDocField.MOLECULE_TYPE)
+ getClass().getResource("/images/sugar.png")
.toString() + "\">");
}
+ summaryColums[colCounter++] = moleculeType;
}
else if (field.equals(PDBDocField.PDB_ID)
&& doc.get(PDBDocField.PDB_ID.getCode()) != null)
{
this.pdbId = doc.get(PDBDocField.PDB_ID.getCode()).toString();
+ summaryBuilder.append(this.pdbId).append(" | ");
+ summaryColums[colCounter++] = this.pdbId;
}
else if (doc.get(field.getCode()) != null)
{
summaryBuilder.append(field.getName()).append(": ")
.append(doc.get(field.getCode())).append(" | ");
+ summaryColums[colCounter++] = doc.get(field.getCode()).toString();
}
}
int endIndex = summaryBuilder.lastIndexOf(" | ");
String fSummary = summaryBuilder.toString().substring(0, endIndex);
- this.summary = fSummary.trim();
+ this.summaryRow = fSummary.trim();
summaryBuilder = null;
}
this.pdbId = pdbId;
}
- public String getSummary()
+ public String getSummaryRow()
+ {
+ return summaryRow;
+ }
+
+ public void setSummaryRow(String summary)
{
- return summary;
+ this.summaryRow = summary;
}
- public void setSummary(String summary)
+ public String[] getSummaryColums()
{
- this.summary = summary;
+ return summaryColums;
+ }
+
+ public void setSummaryColums(String[] summaryColums)
+ {
+ this.summaryColums = summaryColums;
}
public String toString()
StringBuilder html = new StringBuilder();
html.append("<html><div style=\"width:" + width
+ "; word-wrap: break-word; border-bottom-style: dotted;\"> ");
- html.append(summary);
+ html.append(summaryRow);
html.append("</div></html>");
return html.toString();
}
@Override
public int hashCode()
{
- return Objects.hash(this.pdbId, this.summary);
+ return Objects.hash(this.pdbId, this.summaryRow);
+ }
+
+ @Override
+ public boolean equals(Object other)
+ {
+ if (!(other instanceof PDBResponseSummary))
+ {
+ return false;
+ }
+
+ PDBResponseSummary that = (PDBResponseSummary) other;
+
+ // Custom equality check here.
+ return this.pdbId.equals(that.pdbId)
+ && this.summaryRow.equals(that.summaryRow);
}
+
}
}