// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2023.02.22 at 10:08:57 PM GMT
+// Generated on: 2023.03.09 at 07:45:02 AM GMT
//
package jalview.xml.binding.jalview;
import java.math.BigInteger;
+import java.util.ArrayList;
+import java.util.List;
import javax.xml.bind.annotation.XmlAccessType;
import javax.xml.bind.annotation.XmlAccessorType;
import javax.xml.bind.annotation.XmlAttribute;
+import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlType;
-import javax.xml.bind.annotation.XmlValue;
/**
*
* <pre>
* <complexType name="MatrixType">
- * <simpleContent>
- * <extension base="<http://www.w3.org/2001/XMLSchema>string">
- * <attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="elements" type="{http://www.w3.org/2001/XMLSchema}string"/>
+ * <element name="groups" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
+ * <element name="newick" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
+ * <element name="property" type="{www.vamsas.ac.uk/jalview/version2}property" maxOccurs="unbounded" minOccurs="0"/>
+ * </sequence>
* <attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="rows" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
* <attribute name="cols" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * </extension>
- * </simpleContent>
+ * <attribute name="treeMethod" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="cutHeight" type="{http://www.w3.org/2001/XMLSchema}double" />
+ * <attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
* </complexType>
* </pre>
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "MatrixType", propOrder = {
- "value"
+ "elements",
+ "groups",
+ "newick",
+ "property"
})
public class MatrixType {
- @XmlValue
- protected String value;
- @XmlAttribute(name = "id")
- protected String id;
+ @XmlElement(required = true)
+ protected String elements;
+ protected List<String> groups;
+ protected List<String> newick;
+ protected List<Property> property;
@XmlAttribute(name = "type", required = true)
protected String type;
@XmlAttribute(name = "rows", required = true)
protected BigInteger rows;
@XmlAttribute(name = "cols", required = true)
protected BigInteger cols;
+ @XmlAttribute(name = "treeMethod")
+ protected String treeMethod;
+ @XmlAttribute(name = "cutHeight")
+ protected Double cutHeight;
+ @XmlAttribute(name = "id")
+ protected String id;
/**
- * Gets the value of the value property.
+ * Gets the value of the elements property.
*
* @return
* possible object is
* {@link String }
*
*/
- public String getValue() {
- return value;
+ public String getElements() {
+ return elements;
}
/**
- * Sets the value of the value property.
+ * Sets the value of the elements property.
*
* @param value
* allowed object is
* {@link String }
*
*/
- public void setValue(String value) {
- this.value = value;
+ public void setElements(String value) {
+ this.elements = value;
}
/**
- * Gets the value of the id property.
+ * Gets the value of the groups property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a <CODE>set</CODE> method for the groups property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ * <pre>
+ * getGroups().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link String }
+ *
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getId() {
- return id;
+ public List<String> getGroups() {
+ if (groups == null) {
+ groups = new ArrayList<String>();
+ }
+ return this.groups;
}
/**
- * Sets the value of the id property.
+ * Gets the value of the newick property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a <CODE>set</CODE> method for the newick property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ * <pre>
+ * getNewick().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link String }
+ *
*
- * @param value
- * allowed object is
- * {@link String }
- *
*/
- public void setId(String value) {
- this.id = value;
+ public List<String> getNewick() {
+ if (newick == null) {
+ newick = new ArrayList<String>();
+ }
+ return this.newick;
+ }
+
+ /**
+ * Gets the value of the property property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a <CODE>set</CODE> method for the property property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ * <pre>
+ * getProperty().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link Property }
+ *
+ *
+ */
+ public List<Property> getProperty() {
+ if (property == null) {
+ property = new ArrayList<Property>();
+ }
+ return this.property;
}
/**
this.cols = value;
}
+ /**
+ * Gets the value of the treeMethod property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getTreeMethod() {
+ return treeMethod;
+ }
+
+ /**
+ * Sets the value of the treeMethod property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setTreeMethod(String value) {
+ this.treeMethod = value;
+ }
+
+ /**
+ * Gets the value of the cutHeight property.
+ *
+ * @return
+ * possible object is
+ * {@link Double }
+ *
+ */
+ public Double getCutHeight() {
+ return cutHeight;
+ }
+
+ /**
+ * Sets the value of the cutHeight property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Double }
+ *
+ */
+ public void setCutHeight(Double value) {
+ this.cutHeight = value;
+ }
+
+ /**
+ * Gets the value of the id property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getId() {
+ return id;
+ }
+
+ /**
+ * Sets the value of the id property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setId(String value) {
+ this.id = value;
+ }
+
}
git://source.jalview.org / jalview.git / blobdiff