JAL-4134 store/restore Newick tree for PAE annotation row

[jalview.git] / src / jalview / xml / binding / jalview / ObjectFactory.java

diff --git a/src/jalview/xml/binding/jalview/ObjectFactory.java b/src/jalview/xml/binding/jalview/ObjectFactory.java
index b6ea489..f034a2a 100644 (file)
--- a/src/jalview/xml/binding/jalview/ObjectFactory.java
+++ b/src/jalview/xml/binding/jalview/ObjectFactory.java
@@ -1,8 +1,8 @@
 //
-// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 
-// See https://eclipse-ee4j.github.io/jaxb-ri 
+// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
+// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
 // Any modifications to this file will be lost upon recompilation of the source schema. 
-// Generated on: 2021.08.30 at 11:05:22 AM BST 
+// Generated on: 2023.03.17 at 05:31:44 PM GMT 
 //
 
 
@@ -18,7 +18,7 @@ import javax.xml.namespace.QName;
  * This object contains factory methods for each 
  * Java content interface and Java element interface 
  * generated in the jalview.xml.binding.jalview package. 
- * &lt;p&gt;An ObjectFactory allows you to programatically 
+ * <p>An ObjectFactory allows you to programatically 
  * construct new instances of the Java representation 
  * for XML content. The Java representation of XML 
  * content can consist of schema derived interfaces 
@@ -31,9 +31,9 @@ import javax.xml.namespace.QName;
 @XmlRegistry
 public class ObjectFactory {
 
+    private final static QName _WebServiceParameterSet_QNAME = new QName("www.jalview.org/xml/wsparamset", "WebServiceParameterSet");
     private final static QName _JalviewModel_QNAME = new QName("www.jalview.org", "JalviewModel");
     private final static QName _JalviewUserColours_QNAME = new QName("www.jalview.org/colours", "JalviewUserColours");
-    private final static QName _WebServiceParameterSet_QNAME = new QName("www.jalview.org/xml/wsparamset", "WebServiceParameterSet");
 
     /**
      * Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: jalview.xml.binding.jalview
@@ -43,6 +43,14 @@ public class ObjectFactory {
     }
 
     /**
+     * Create an instance of {@link AlcodonFrame }
+     * 
+     */
+    public AlcodonFrame createAlcodonFrame() {
+        return new AlcodonFrame();
+    }
+
+    /**
      * Create an instance of {@link MapListType }
      * 
      */
@@ -59,14 +67,6 @@ public class ObjectFactory {
     }
 
     /**
-     * Create an instance of {@link AlcodonFrame }
-     * 
-     */
-    public AlcodonFrame createAlcodonFrame() {
-        return new AlcodonFrame();
-    }
-
-    /**
      * Create an instance of {@link Annotation }
      * 
      */
@@ -171,6 +171,14 @@ public class ObjectFactory {
     }
 
     /**
+     * Create an instance of {@link DoubleMatrix }
+     * 
+     */
+    public DoubleMatrix createDoubleMatrix() {
+        return new DoubleMatrix();
+    }
+
+    /**
      * Create an instance of {@link AnnotationColourScheme }
      * 
      */
@@ -195,11 +203,27 @@ public class ObjectFactory {
     }
 
     /**
-     * Create an instance of {@link DoubleMatrix }
+     * Create an instance of {@link AlcodonFrame.Alcodon }
      * 
      */
-    public DoubleMatrix createDoubleMatrix() {
-        return new DoubleMatrix();
+    public AlcodonFrame.Alcodon createAlcodonFrameAlcodon() {
+        return new AlcodonFrame.Alcodon();
+    }
+
+    /**
+     * Create an instance of {@link AlcodonFrame.AlcodMap }
+     * 
+     */
+    public AlcodonFrame.AlcodMap createAlcodonFrameAlcodMap() {
+        return new AlcodonFrame.AlcodMap();
+    }
+
+    /**
+     * Create an instance of {@link AnnotationElement }
+     * 
+     */
+    public AnnotationElement createAnnotationElement() {
+        return new AnnotationElement();
     }
 
     /**
@@ -243,43 +267,27 @@ public class ObjectFactory {
     }
 
     /**
-     * Create an instance of {@link AlcodonFrame.Alcodon }
-     * 
-     */
-    public AlcodonFrame.Alcodon createAlcodonFrameAlcodon() {
-        return new AlcodonFrame.Alcodon();
-    }
-
-    /**
-     * Create an instance of {@link AlcodonFrame.AlcodMap }
+     * Create an instance of {@link Annotation.ThresholdLine }
      * 
      */
-    public AlcodonFrame.AlcodMap createAlcodonFrameAlcodMap() {
-        return new AlcodonFrame.AlcodMap();
+    public Annotation.ThresholdLine createAnnotationThresholdLine() {
+        return new Annotation.ThresholdLine();
     }
 
     /**
-     * Create an instance of {@link AnnotationElement }
+     * Create an instance of {@link MatrixType }
      * 
      */
-    public AnnotationElement createAnnotationElement() {
-        return new AnnotationElement();
+    public MatrixType createMatrixType() {
+        return new MatrixType();
     }
 
     /**
-     * Create an instance of {@link Annotation.ThresholdLine }
+     * Create an instance of {@link jalview.xml.binding.jalview.Property }
      * 
      */
-    public Annotation.ThresholdLine createAnnotationThresholdLine() {
-        return new Annotation.ThresholdLine();
-    }
-
-    /**
-     * Create an instance of {@link Annotation.Property }
-     * 
-     */
-    public Annotation.Property createAnnotationProperty() {
-        return new Annotation.Property();
+    public jalview.xml.binding.jalview.Property createProperty() {
+        return new jalview.xml.binding.jalview.Property();
     }
 
     /**
@@ -443,6 +451,14 @@ public class ObjectFactory {
     }
 
     /**
+     * Create an instance of {@link JalviewModel.Viewport.Overview }
+     * 
+     */
+    public JalviewModel.Viewport.Overview createJalviewModelViewportOverview() {
+        return new JalviewModel.Viewport.Overview();
+    }
+
+    /**
      * Create an instance of {@link JalviewModel.JSeq.RnaViewer.SecondaryStructure }
      * 
      */
@@ -459,12 +475,17 @@ public class ObjectFactory {
     }
 
     /**
-     * Create an instance of {@link JAXBElement }{@code <}{@link JalviewModel }{@code >}
+     * Create an instance of {@link JAXBElement }{@code <}{@link WebServiceParameterSet }{@code >}}
+     * 
+     */
+    @XmlElementDecl(namespace = "www.jalview.org/xml/wsparamset", name = "WebServiceParameterSet")
+    public JAXBElement<WebServiceParameterSet> createWebServiceParameterSet(WebServiceParameterSet value) {
+        return new JAXBElement<WebServiceParameterSet>(_WebServiceParameterSet_QNAME, WebServiceParameterSet.class, null, value);
+    }
+
+    /**
+     * Create an instance of {@link JAXBElement }{@code <}{@link JalviewModel }{@code >}}
      * 
-     * @param value
-     *     Java instance representing xml element's value.
-     * @return
-     *     the new instance of {@link JAXBElement }{@code <}{@link JalviewModel }{@code >}
      */
     @XmlElementDecl(namespace = "www.jalview.org", name = "JalviewModel")
     public JAXBElement<JalviewModel> createJalviewModel(JalviewModel value) {
@@ -472,29 +493,12 @@ public class ObjectFactory {
     }
 
     /**
-     * Create an instance of {@link JAXBElement }{@code <}{@link JalviewUserColours }{@code >}
+     * Create an instance of {@link JAXBElement }{@code <}{@link JalviewUserColours }{@code >}}
      * 
-     * @param value
-     *     Java instance representing xml element's value.
-     * @return
-     *     the new instance of {@link JAXBElement }{@code <}{@link JalviewUserColours }{@code >}
      */
     @XmlElementDecl(namespace = "www.jalview.org/colours", name = "JalviewUserColours")
     public JAXBElement<JalviewUserColours> createJalviewUserColours(JalviewUserColours value) {
         return new JAXBElement<JalviewUserColours>(_JalviewUserColours_QNAME, JalviewUserColours.class, null, value);
     }
 
-    /**
-     * Create an instance of {@link JAXBElement }{@code <}{@link WebServiceParameterSet }{@code >}
-     * 
-     * @param value
-     *     Java instance representing xml element's value.
-     * @return
-     *     the new instance of {@link JAXBElement }{@code <}{@link WebServiceParameterSet }{@code >}
-     */
-    @XmlElementDecl(namespace = "www.jalview.org/xml/wsparamset", name = "WebServiceParameterSet")
-    public JAXBElement<WebServiceParameterSet> createWebServiceParameterSet(WebServiceParameterSet value) {
-        return new JAXBElement<WebServiceParameterSet>(_WebServiceParameterSet_QNAME, WebServiceParameterSet.class, null, value);
-    }
-
 }