+++ /dev/null
-//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
-// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.09.18 at 04:36:20 PM BST
-//
-
-
-package jalview.xml.binding.jalviewBH;
-
-import java.util.ArrayList;
-import java.util.List;
-import javax.xml.bind.annotation.XmlAccessType;
-import javax.xml.bind.annotation.XmlAccessorType;
-import javax.xml.bind.annotation.XmlAttribute;
-import javax.xml.bind.annotation.XmlElement;
-import javax.xml.bind.annotation.XmlRootElement;
-import javax.xml.bind.annotation.XmlType;
-
-
-/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element ref="{www.vamsas.ac.uk/jalview/version2}Sequence" maxOccurs="unbounded" minOccurs="0"/>
- * <element ref="{www.vamsas.ac.uk/jalview/version2}Annotation" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="sequenceSetProperties" maxOccurs="unbounded" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element ref="{www.vamsas.ac.uk/jalview/version2}AlcodonFrame" maxOccurs="unbounded" minOccurs="0"/>
- * </sequence>
- * <attribute name="gapChar" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="datasetId" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
- *
- *
- */
-@XmlAccessorType(XmlAccessType.FIELD)
-@XmlType(name = "", propOrder = {
- "sequence",
- "annotation",
- "sequenceSetProperties",
- "alcodonFrame"
-})
-@XmlRootElement(name = "SequenceSet")
-public class SequenceSet {
-
- // BH testing here
- private class Sequence {}
- private class Annotation {}
- private class AlcodonFrame {}
- //
-
- @XmlElement(name = "Sequence")
- protected List<Sequence> sequence;
- @XmlElement(name = "Annotation")
- protected List<Annotation> annotation;
- protected List<SequenceSet.SequenceSetProperties> sequenceSetProperties;
- @XmlElement(name = "AlcodonFrame")
- protected List<AlcodonFrame> alcodonFrame;
- @XmlAttribute(name = "gapChar", required = true)
- protected String gapChar;
- @XmlAttribute(name = "datasetId")
- protected String datasetId;
-
- /**
- * Gets the value of the sequence property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the sequence property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getSequence().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link Sequence }
- *
- *
- */
- public List<Sequence> getSequence() {
- if (sequence == null) {
- sequence = new ArrayList<Sequence>();
- }
- return this.sequence;
- }
-
- /**
- * Gets the value of the annotation property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the annotation property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getAnnotation().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link Annotation }
- *
- *
- */
- public List<Annotation> getAnnotation() {
- if (annotation == null) {
- annotation = new ArrayList<Annotation>();
- }
- return this.annotation;
- }
-
- /**
- * Gets the value of the sequenceSetProperties property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the sequenceSetProperties property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getSequenceSetProperties().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link SequenceSet.SequenceSetProperties }
- *
- *
- */
- public List<SequenceSet.SequenceSetProperties> getSequenceSetProperties() {
- if (sequenceSetProperties == null) {
- sequenceSetProperties = new ArrayList<SequenceSet.SequenceSetProperties>();
- }
- return this.sequenceSetProperties;
- }
-
- /**
- * Gets the value of the alcodonFrame property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the alcodonFrame property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getAlcodonFrame().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link AlcodonFrame }
- *
- *
- */
- public List<AlcodonFrame> getAlcodonFrame() {
- if (alcodonFrame == null) {
- alcodonFrame = new ArrayList<AlcodonFrame>();
- }
- return this.alcodonFrame;
- }
-
- /**
- * Gets the value of the gapChar property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getGapChar() {
- return gapChar;
- }
-
- /**
- * Sets the value of the gapChar property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setGapChar(String value) {
- this.gapChar = value;
- }
-
- /**
- * Gets the value of the datasetId property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getDatasetId() {
- return datasetId;
- }
-
- /**
- * Sets the value of the datasetId property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setDatasetId(String value) {
- this.datasetId = value;
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class SequenceSetProperties {
-
- @XmlAttribute(name = "key")
- protected String key;
- @XmlAttribute(name = "value")
- protected String value;
-
- /**
- * Gets the value of the key property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getKey() {
- return key;
- }
-
- /**
- * Sets the value of the key property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setKey(String value) {
- this.key = value;
- }
-
- /**
- * Gets the value of the value property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getValue() {
- return value;
- }
-
- /**
- * Sets the value of the value property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setValue(String value) {
- this.value = value;
- }
-
- }
-
-}
git://source.jalview.org / jalview.git / blobdiff