--- /dev/null
+//
+// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
+// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// Any modifications to this file will be lost upon recompilation of the source schema.
+// Generated on: 2015.10.09 at 03:18:33 PM BST
+//
+
+
+package jalview.xml.binding.sifts;
+
+import java.math.BigInteger;
+import java.util.ArrayList;
+import java.util.List;
+import javax.xml.bind.annotation.XmlAccessType;
+import javax.xml.bind.annotation.XmlAccessorType;
+import javax.xml.bind.annotation.XmlAttribute;
+import javax.xml.bind.annotation.XmlElement;
+import javax.xml.bind.annotation.XmlRootElement;
+import javax.xml.bind.annotation.XmlSchemaType;
+import javax.xml.bind.annotation.XmlType;
+import javax.xml.bind.annotation.XmlValue;
+
+
+/**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="alignObject" maxOccurs="unbounded">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="alignObjectDetail" maxOccurs="unbounded" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}detail"/>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="sequence" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}region"/>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}dbRef"/>
+ * <attribute name="objectVersion" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="intObjectId" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="type" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="score" maxOccurs="unbounded" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="methodName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="scoreValue" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="block" maxOccurs="unbounded">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="segment" maxOccurs="unbounded">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence minOccurs="0">
+ * <element name="cigar" type="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}cigarstring"/>
+ * </sequence>
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}region"/>
+ * <attribute name="intObjectId" use="required" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
+ * <attribute name="strand" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * <attribute name="blockScore" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="blockOrder" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="geo3d" maxOccurs="unbounded" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="vector">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="x" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * <attribute name="y" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * <attribute name="z" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="matrix" maxOccurs="unbounded">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="max11">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max12">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max13">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max21">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max22">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max23">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max31">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max32">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max33">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * <attribute name="intObjectId" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * <attribute name="alignType" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+@XmlAccessorType(XmlAccessType.FIELD)
+@XmlType(name = "", propOrder = {
+ "alignObject",
+ "score",
+ "block",
+ "geo3D"
+})
+@XmlRootElement(name = "alignment")
+public class Alignment {
+
+ @XmlElement(required = true)
+ protected List<Alignment.AlignObject> alignObject;
+ protected List<Alignment.Score> score;
+ @XmlElement(required = true)
+ protected List<Alignment.Block> block;
+ @XmlElement(name = "geo3d")
+ protected List<Alignment.Geo3D> geo3D;
+ @XmlAttribute(name = "alignType", required = true)
+ protected String alignType;
+
+ /**
+ * Gets the value of the alignObject property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a <CODE>set</CODE> method for the alignObject property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ * <pre>
+ * getAlignObject().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link Alignment.AlignObject }
+ *
+ *
+ */
+ public List<Alignment.AlignObject> getAlignObject() {
+ if (alignObject == null) {
+ alignObject = new ArrayList<Alignment.AlignObject>();
+ }
+ return this.alignObject;
+ }
+
+ /**
+ * Gets the value of the score property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a <CODE>set</CODE> method for the score property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ * <pre>
+ * getScore().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link Alignment.Score }
+ *
+ *
+ */
+ public List<Alignment.Score> getScore() {
+ if (score == null) {
+ score = new ArrayList<Alignment.Score>();
+ }
+ return this.score;
+ }
+
+ /**
+ * Gets the value of the block property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a <CODE>set</CODE> method for the block property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ * <pre>
+ * getBlock().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link Alignment.Block }
+ *
+ *
+ */
+ public List<Alignment.Block> getBlock() {
+ if (block == null) {
+ block = new ArrayList<Alignment.Block>();
+ }
+ return this.block;
+ }
+
+ /**
+ * Gets the value of the geo3D property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a <CODE>set</CODE> method for the geo3D property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ * <pre>
+ * getGeo3D().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link Alignment.Geo3D }
+ *
+ *
+ */
+ public List<Alignment.Geo3D> getGeo3D() {
+ if (geo3D == null) {
+ geo3D = new ArrayList<Alignment.Geo3D>();
+ }
+ return this.geo3D;
+ }
+
+ /**
+ * Gets the value of the alignType property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getAlignType() {
+ return alignType;
+ }
+
+ /**
+ * Sets the value of the alignType property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setAlignType(String value) {
+ this.alignType = value;
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="alignObjectDetail" maxOccurs="unbounded" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}detail"/>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="sequence" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}region"/>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}dbRef"/>
+ * <attribute name="objectVersion" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="intObjectId" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="type" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = {
+ "alignObjectDetail",
+ "sequence"
+ })
+ public static class AlignObject {
+
+ protected List<Alignment.AlignObject.AlignObjectDetail> alignObjectDetail;
+ protected Alignment.AlignObject.Sequence sequence;
+ @XmlAttribute(name = "objectVersion", required = true)
+ protected String objectVersion;
+ @XmlAttribute(name = "intObjectId", required = true)
+ protected String intObjectId;
+ @XmlAttribute(name = "type")
+ protected String type;
+ @XmlAttribute(name = "dbSource", required = true)
+ protected String dbSource;
+ @XmlAttribute(name = "dbCoordSys", required = true)
+ protected String dbCoordSys;
+ @XmlAttribute(name = "dbAccessionId", required = true)
+ protected String dbAccessionId;
+ @XmlAttribute(name = "dbEvidence")
+ protected String dbEvidence;
+ @XmlAttribute(name = "dbVersion")
+ protected String dbVersion;
+
+ /**
+ * Gets the value of the alignObjectDetail property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a <CODE>set</CODE> method for the alignObjectDetail property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ * <pre>
+ * getAlignObjectDetail().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link Alignment.AlignObject.AlignObjectDetail }
+ *
+ *
+ */
+ public List<Alignment.AlignObject.AlignObjectDetail> getAlignObjectDetail() {
+ if (alignObjectDetail == null) {
+ alignObjectDetail = new ArrayList<Alignment.AlignObject.AlignObjectDetail>();
+ }
+ return this.alignObjectDetail;
+ }
+
+ /**
+ * Gets the value of the sequence property.
+ *
+ * @return
+ * possible object is
+ * {@link Alignment.AlignObject.Sequence }
+ *
+ */
+ public Alignment.AlignObject.Sequence getSequence() {
+ return sequence;
+ }
+
+ /**
+ * Sets the value of the sequence property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Alignment.AlignObject.Sequence }
+ *
+ */
+ public void setSequence(Alignment.AlignObject.Sequence value) {
+ this.sequence = value;
+ }
+
+ /**
+ * Gets the value of the objectVersion property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getObjectVersion() {
+ return objectVersion;
+ }
+
+ /**
+ * Sets the value of the objectVersion property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setObjectVersion(String value) {
+ this.objectVersion = value;
+ }
+
+ /**
+ * Gets the value of the intObjectId property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getIntObjectId() {
+ return intObjectId;
+ }
+
+ /**
+ * Sets the value of the intObjectId property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setIntObjectId(String value) {
+ this.intObjectId = value;
+ }
+
+ /**
+ * Gets the value of the type property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getType() {
+ return type;
+ }
+
+ /**
+ * Sets the value of the type property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setType(String value) {
+ this.type = value;
+ }
+
+ /**
+ * Gets the value of the dbSource property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getDbSource() {
+ return dbSource;
+ }
+
+ /**
+ * Sets the value of the dbSource property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setDbSource(String value) {
+ this.dbSource = value;
+ }
+
+ /**
+ * Gets the value of the dbCoordSys property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getDbCoordSys() {
+ return dbCoordSys;
+ }
+
+ /**
+ * Sets the value of the dbCoordSys property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setDbCoordSys(String value) {
+ this.dbCoordSys = value;
+ }
+
+ /**
+ * Gets the value of the dbAccessionId property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getDbAccessionId() {
+ return dbAccessionId;
+ }
+
+ /**
+ * Sets the value of the dbAccessionId property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setDbAccessionId(String value) {
+ this.dbAccessionId = value;
+ }
+
+ /**
+ * Gets the value of the dbEvidence property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getDbEvidence() {
+ return dbEvidence;
+ }
+
+ /**
+ * Sets the value of the dbEvidence property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setDbEvidence(String value) {
+ this.dbEvidence = value;
+ }
+
+ /**
+ * Gets the value of the dbVersion property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getDbVersion() {
+ return dbVersion;
+ }
+
+ /**
+ * Sets the value of the dbVersion property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setDbVersion(String value) {
+ this.dbVersion = value;
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}detail"/>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = {
+ "content"
+ })
+ public static class AlignObjectDetail {
+
+ @XmlValue
+ protected String content;
+ @XmlAttribute(name = "dbSource")
+ protected String dbSource;
+ @XmlAttribute(name = "property", required = true)
+ protected String property;
+
+ /**
+ * Gets the value of the content property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getContent() {
+ return content;
+ }
+
+ /**
+ * Sets the value of the content property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setContent(String value) {
+ this.content = value;
+ }
+
+ /**
+ * Gets the value of the dbSource property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getDbSource() {
+ return dbSource;
+ }
+
+ /**
+ * Sets the value of the dbSource property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setDbSource(String value) {
+ this.dbSource = value;
+ }
+
+ /**
+ * Gets the value of the property property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getProperty() {
+ return property;
+ }
+
+ /**
+ * Sets the value of the property property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setProperty(String value) {
+ this.property = value;
+ }
+
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}region"/>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = {
+ "content"
+ })
+ public static class Sequence {
+
+ @XmlValue
+ protected String content;
+ @XmlAttribute(name = "start")
+ protected String start;
+ @XmlAttribute(name = "end")
+ protected String end;
+
+ /**
+ * Gets the value of the content property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getContent() {
+ return content;
+ }
+
+ /**
+ * Sets the value of the content property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setContent(String value) {
+ this.content = value;
+ }
+
+ /**
+ * Gets the value of the start property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getStart() {
+ return start;
+ }
+
+ /**
+ * Sets the value of the start property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setStart(String value) {
+ this.start = value;
+ }
+
+ /**
+ * Gets the value of the end property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getEnd() {
+ return end;
+ }
+
+ /**
+ * Sets the value of the end property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setEnd(String value) {
+ this.end = value;
+ }
+
+ }
+
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="segment" maxOccurs="unbounded">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence minOccurs="0">
+ * <element name="cigar" type="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}cigarstring"/>
+ * </sequence>
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}region"/>
+ * <attribute name="intObjectId" use="required" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
+ * <attribute name="strand" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * <attribute name="blockScore" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="blockOrder" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = {
+ "segment"
+ })
+ public static class Block {
+
+ @XmlElement(required = true)
+ protected List<Alignment.Block.Segment> segment;
+ @XmlAttribute(name = "blockScore")
+ protected String blockScore;
+ @XmlAttribute(name = "blockOrder", required = true)
+ protected BigInteger blockOrder;
+
+ /**
+ * Gets the value of the segment property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a <CODE>set</CODE> method for the segment property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ * <pre>
+ * getSegment().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link Alignment.Block.Segment }
+ *
+ *
+ */
+ public List<Alignment.Block.Segment> getSegment() {
+ if (segment == null) {
+ segment = new ArrayList<Alignment.Block.Segment>();
+ }
+ return this.segment;
+ }
+
+ /**
+ * Gets the value of the blockScore property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getBlockScore() {
+ return blockScore;
+ }
+
+ /**
+ * Sets the value of the blockScore property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setBlockScore(String value) {
+ this.blockScore = value;
+ }
+
+ /**
+ * Gets the value of the blockOrder property.
+ *
+ * @return
+ * possible object is
+ * {@link BigInteger }
+ *
+ */
+ public BigInteger getBlockOrder() {
+ return blockOrder;
+ }
+
+ /**
+ * Sets the value of the blockOrder property.
+ *
+ * @param value
+ * allowed object is
+ * {@link BigInteger }
+ *
+ */
+ public void setBlockOrder(BigInteger value) {
+ this.blockOrder = value;
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence minOccurs="0">
+ * <element name="cigar" type="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}cigarstring"/>
+ * </sequence>
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}region"/>
+ * <attribute name="intObjectId" use="required" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
+ * <attribute name="strand" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = {
+ "cigar"
+ })
+ public static class Segment {
+
+ protected String cigar;
+ @XmlAttribute(name = "intObjectId", required = true)
+ @XmlSchemaType(name = "anySimpleType")
+ protected String intObjectId;
+ @XmlAttribute(name = "strand")
+ @XmlSchemaType(name = "anySimpleType")
+ protected String strand;
+ @XmlAttribute(name = "start")
+ protected String start;
+ @XmlAttribute(name = "end")
+ protected String end;
+
+ /**
+ * Gets the value of the cigar property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getCigar() {
+ return cigar;
+ }
+
+ /**
+ * Sets the value of the cigar property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setCigar(String value) {
+ this.cigar = value;
+ }
+
+ /**
+ * Gets the value of the intObjectId property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getIntObjectId() {
+ return intObjectId;
+ }
+
+ /**
+ * Sets the value of the intObjectId property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setIntObjectId(String value) {
+ this.intObjectId = value;
+ }
+
+ /**
+ * Gets the value of the strand property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getStrand() {
+ return strand;
+ }
+
+ /**
+ * Sets the value of the strand property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setStrand(String value) {
+ this.strand = value;
+ }
+
+ /**
+ * Gets the value of the start property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getStart() {
+ return start;
+ }
+
+ /**
+ * Sets the value of the start property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setStart(String value) {
+ this.start = value;
+ }
+
+ /**
+ * Gets the value of the end property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getEnd() {
+ return end;
+ }
+
+ /**
+ * Sets the value of the end property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setEnd(String value) {
+ this.end = value;
+ }
+
+ }
+
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="vector">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="x" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * <attribute name="y" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * <attribute name="z" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="matrix" maxOccurs="unbounded">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="max11">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max12">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max13">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max21">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max22">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max23">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max31">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max32">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max33">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * <attribute name="intObjectId" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = {
+ "vector",
+ "matrix"
+ })
+ public static class Geo3D {
+
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Vector vector;
+ @XmlElement(required = true)
+ protected List<Alignment.Geo3D.Matrix> matrix;
+ @XmlAttribute(name = "intObjectId", required = true)
+ protected String intObjectId;
+
+ /**
+ * Gets the value of the vector property.
+ *
+ * @return
+ * possible object is
+ * {@link Alignment.Geo3D.Vector }
+ *
+ */
+ public Alignment.Geo3D.Vector getVector() {
+ return vector;
+ }
+
+ /**
+ * Sets the value of the vector property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Alignment.Geo3D.Vector }
+ *
+ */
+ public void setVector(Alignment.Geo3D.Vector value) {
+ this.vector = value;
+ }
+
+ /**
+ * Gets the value of the matrix property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a <CODE>set</CODE> method for the matrix property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ * <pre>
+ * getMatrix().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link Alignment.Geo3D.Matrix }
+ *
+ *
+ */
+ public List<Alignment.Geo3D.Matrix> getMatrix() {
+ if (matrix == null) {
+ matrix = new ArrayList<Alignment.Geo3D.Matrix>();
+ }
+ return this.matrix;
+ }
+
+ /**
+ * Gets the value of the intObjectId property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getIntObjectId() {
+ return intObjectId;
+ }
+
+ /**
+ * Sets the value of the intObjectId property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setIntObjectId(String value) {
+ this.intObjectId = value;
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="max11">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max12">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max13">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max21">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max22">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max23">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max31">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max32">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max33">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = {
+ "max11",
+ "max12",
+ "max13",
+ "max21",
+ "max22",
+ "max23",
+ "max31",
+ "max32",
+ "max33"
+ })
+ public static class Matrix {
+
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max11 max11;
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max12 max12;
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max13 max13;
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max21 max21;
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max22 max22;
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max23 max23;
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max31 max31;
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max32 max32;
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max33 max33;
+
+ /**
+ * Gets the value of the max11 property.
+ *
+ * @return
+ * possible object is
+ * {@link Alignment.Geo3D.Matrix.Max11 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max11 getMax11() {
+ return max11;
+ }
+
+ /**
+ * Sets the value of the max11 property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Alignment.Geo3D.Matrix.Max11 }
+ *
+ */
+ public void setMax11(Alignment.Geo3D.Matrix.Max11 value) {
+ this.max11 = value;
+ }
+
+ /**
+ * Gets the value of the max12 property.
+ *
+ * @return
+ * possible object is
+ * {@link Alignment.Geo3D.Matrix.Max12 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max12 getMax12() {
+ return max12;
+ }
+
+ /**
+ * Sets the value of the max12 property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Alignment.Geo3D.Matrix.Max12 }
+ *
+ */
+ public void setMax12(Alignment.Geo3D.Matrix.Max12 value) {
+ this.max12 = value;
+ }
+
+ /**
+ * Gets the value of the max13 property.
+ *
+ * @return
+ * possible object is
+ * {@link Alignment.Geo3D.Matrix.Max13 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max13 getMax13() {
+ return max13;
+ }
+
+ /**
+ * Sets the value of the max13 property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Alignment.Geo3D.Matrix.Max13 }
+ *
+ */
+ public void setMax13(Alignment.Geo3D.Matrix.Max13 value) {
+ this.max13 = value;
+ }
+
+ /**
+ * Gets the value of the max21 property.
+ *
+ * @return
+ * possible object is
+ * {@link Alignment.Geo3D.Matrix.Max21 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max21 getMax21() {
+ return max21;
+ }
+
+ /**
+ * Sets the value of the max21 property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Alignment.Geo3D.Matrix.Max21 }
+ *
+ */
+ public void setMax21(Alignment.Geo3D.Matrix.Max21 value) {
+ this.max21 = value;
+ }
+
+ /**
+ * Gets the value of the max22 property.
+ *
+ * @return
+ * possible object is
+ * {@link Alignment.Geo3D.Matrix.Max22 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max22 getMax22() {
+ return max22;
+ }
+
+ /**
+ * Sets the value of the max22 property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Alignment.Geo3D.Matrix.Max22 }
+ *
+ */
+ public void setMax22(Alignment.Geo3D.Matrix.Max22 value) {
+ this.max22 = value;
+ }
+
+ /**
+ * Gets the value of the max23 property.
+ *
+ * @return
+ * possible object is
+ * {@link Alignment.Geo3D.Matrix.Max23 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max23 getMax23() {
+ return max23;
+ }
+
+ /**
+ * Sets the value of the max23 property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Alignment.Geo3D.Matrix.Max23 }
+ *
+ */
+ public void setMax23(Alignment.Geo3D.Matrix.Max23 value) {
+ this.max23 = value;
+ }
+
+ /**
+ * Gets the value of the max31 property.
+ *
+ * @return
+ * possible object is
+ * {@link Alignment.Geo3D.Matrix.Max31 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max31 getMax31() {
+ return max31;
+ }
+
+ /**
+ * Sets the value of the max31 property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Alignment.Geo3D.Matrix.Max31 }
+ *
+ */
+ public void setMax31(Alignment.Geo3D.Matrix.Max31 value) {
+ this.max31 = value;
+ }
+
+ /**
+ * Gets the value of the max32 property.
+ *
+ * @return
+ * possible object is
+ * {@link Alignment.Geo3D.Matrix.Max32 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max32 getMax32() {
+ return max32;
+ }
+
+ /**
+ * Sets the value of the max32 property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Alignment.Geo3D.Matrix.Max32 }
+ *
+ */
+ public void setMax32(Alignment.Geo3D.Matrix.Max32 value) {
+ this.max32 = value;
+ }
+
+ /**
+ * Gets the value of the max33 property.
+ *
+ * @return
+ * possible object is
+ * {@link Alignment.Geo3D.Matrix.Max33 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max33 getMax33() {
+ return max33;
+ }
+
+ /**
+ * Sets the value of the max33 property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Alignment.Geo3D.Matrix.Max33 }
+ *
+ */
+ public void setMax33(Alignment.Geo3D.Matrix.Max33 value) {
+ this.max33 = value;
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max11 {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
+
+ /**
+ * Gets the value of the coord property.
+ *
+ */
+ public float getCoord() {
+ return coord;
+ }
+
+ /**
+ * Sets the value of the coord property.
+ *
+ */
+ public void setCoord(float value) {
+ this.coord = value;
+ }
+
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max12 {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
+
+ /**
+ * Gets the value of the coord property.
+ *
+ */
+ public float getCoord() {
+ return coord;
+ }
+
+ /**
+ * Sets the value of the coord property.
+ *
+ */
+ public void setCoord(float value) {
+ this.coord = value;
+ }
+
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max13 {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
+
+ /**
+ * Gets the value of the coord property.
+ *
+ */
+ public float getCoord() {
+ return coord;
+ }
+
+ /**
+ * Sets the value of the coord property.
+ *
+ */
+ public void setCoord(float value) {
+ this.coord = value;
+ }
+
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max21 {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
+
+ /**
+ * Gets the value of the coord property.
+ *
+ */
+ public float getCoord() {
+ return coord;
+ }
+
+ /**
+ * Sets the value of the coord property.
+ *
+ */
+ public void setCoord(float value) {
+ this.coord = value;
+ }
+
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max22 {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
+
+ /**
+ * Gets the value of the coord property.
+ *
+ */
+ public float getCoord() {
+ return coord;
+ }
+
+ /**
+ * Sets the value of the coord property.
+ *
+ */
+ public void setCoord(float value) {
+ this.coord = value;
+ }
+
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max23 {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
+
+ /**
+ * Gets the value of the coord property.
+ *
+ */
+ public float getCoord() {
+ return coord;
+ }
+
+ /**
+ * Sets the value of the coord property.
+ *
+ */
+ public void setCoord(float value) {
+ this.coord = value;
+ }
+
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max31 {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
+
+ /**
+ * Gets the value of the coord property.
+ *
+ */
+ public float getCoord() {
+ return coord;
+ }
+
+ /**
+ * Sets the value of the coord property.
+ *
+ */
+ public void setCoord(float value) {
+ this.coord = value;
+ }
+
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max32 {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
+
+ /**
+ * Gets the value of the coord property.
+ *
+ */
+ public float getCoord() {
+ return coord;
+ }
+
+ /**
+ * Sets the value of the coord property.
+ *
+ */
+ public void setCoord(float value) {
+ this.coord = value;
+ }
+
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max33 {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
+
+ /**
+ * Gets the value of the coord property.
+ *
+ */
+ public float getCoord() {
+ return coord;
+ }
+
+ /**
+ * Sets the value of the coord property.
+ *
+ */
+ public void setCoord(float value) {
+ this.coord = value;
+ }
+
+ }
+
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="x" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * <attribute name="y" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * <attribute name="z" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Vector {
+
+ @XmlAttribute(name = "x", required = true)
+ protected float x;
+ @XmlAttribute(name = "y", required = true)
+ protected float y;
+ @XmlAttribute(name = "z", required = true)
+ protected float z;
+
+ /**
+ * Gets the value of the x property.
+ *
+ */
+ public float getX() {
+ return x;
+ }
+
+ /**
+ * Sets the value of the x property.
+ *
+ */
+ public void setX(float value) {
+ this.x = value;
+ }
+
+ /**
+ * Gets the value of the y property.
+ *
+ */
+ public float getY() {
+ return y;
+ }
+
+ /**
+ * Sets the value of the y property.
+ *
+ */
+ public void setY(float value) {
+ this.y = value;
+ }
+
+ /**
+ * Gets the value of the z property.
+ *
+ */
+ public float getZ() {
+ return z;
+ }
+
+ /**
+ * Sets the value of the z property.
+ *
+ */
+ public void setZ(float value) {
+ this.z = value;
+ }
+
+ }
+
+ }
+
+
+ /**
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="methodName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="scoreValue" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Score {
+
+ @XmlAttribute(name = "methodName", required = true)
+ protected String methodName;
+ @XmlAttribute(name = "scoreValue", required = true)
+ protected String scoreValue;
+
+ /**
+ * Gets the value of the methodName property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getMethodName() {
+ return methodName;
+ }
+
+ /**
+ * Sets the value of the methodName property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setMethodName(String value) {
+ this.methodName = value;
+ }
+
+ /**
+ * Gets the value of the scoreValue property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getScoreValue() {
+ return scoreValue;
+ }
+
+ /**
+ * Sets the value of the scoreValue property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setScoreValue(String value) {
+ this.scoreValue = value;
+ }
+
+ }
+
+}
git://source.jalview.org / jalview.git / blobdiff