Merge branch 'Jalview-JS/develop' into develop

[jalview.git] / src / jalview / xml / binding / uniprot / CommentType.java

diff --git a/src/jalview/xml/binding/uniprot/CommentType.java b/src/jalview/xml/binding/uniprot/CommentType.java
index b0bbf77..9cc5164 100644 (file)
--- a/src/jalview/xml/binding/uniprot/CommentType.java
+++ b/src/jalview/xml/binding/uniprot/CommentType.java
@@ -2,7 +2,7 @@
 // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
 // See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
 // Any modifications to this file will be lost upon recompilation of the source schema. 
-// Generated on: 2018.09.13 at 10:18:53 AM BST 
+// Generated on: 2019.04.05 at 08:01:44 AM BST 
 //
 
 
@@ -35,6 +35,10 @@ import javax.xml.bind.annotation.XmlType;
  *         &lt;choice minOccurs="0">
  *           &lt;group ref="{http://uniprot.org/uniprot}bpcCommentGroup"/>
  *           &lt;sequence>
+ *             &lt;element name="reaction" type="{http://uniprot.org/uniprot}reactionType"/>
+ *             &lt;element name="physiologicalReaction" type="{http://uniprot.org/uniprot}physiologicalReactionType" maxOccurs="2" minOccurs="0"/>
+ *           &lt;/sequence>
+ *           &lt;sequence>
  *             &lt;element name="cofactor" type="{http://uniprot.org/uniprot}cofactorType" maxOccurs="unbounded"/>
  *           &lt;/sequence>
  *           &lt;sequence>
@@ -176,6 +180,8 @@ import javax.xml.bind.annotation.XmlType;
     "phDependence",
     "redoxPotential",
     "temperatureDependence",
+    "reaction",
+    "physiologicalReaction",
     "cofactor",
     "subcellularLocation",
     "conflict",
@@ -197,6 +203,8 @@ public class CommentType {
     protected CommentType.PhDependence phDependence;
     protected CommentType.RedoxPotential redoxPotential;
     protected CommentType.TemperatureDependence temperatureDependence;
+    protected ReactionType reaction;
+    protected List<PhysiologicalReactionType> physiologicalReaction;
     protected List<CofactorType> cofactor;
     protected List<SubcellularLocationType> subcellularLocation;
     protected CommentType.Conflict conflict;
@@ -370,6 +378,59 @@ public class CommentType {
     }
 
     /**
+     * Gets the value of the reaction property.
+     * 
+     * @return
+     *     possible object is
+     *     {@link ReactionType }
+     *     
+     */
+    public ReactionType getReaction() {
+        return reaction;
+    }
+
+    /**
+     * Sets the value of the reaction property.
+     * 
+     * @param value
+     *     allowed object is
+     *     {@link ReactionType }
+     *     
+     */
+    public void setReaction(ReactionType value) {
+        this.reaction = value;
+    }
+
+    /**
+     * Gets the value of the physiologicalReaction property.
+     * 
+     * <p>
+     * This accessor method returns a reference to the live list,
+     * not a snapshot. Therefore any modification you make to the
+     * returned list will be present inside the JAXB object.
+     * This is why there is not a <CODE>set</CODE> method for the physiologicalReaction property.
+     * 
+     * <p>
+     * For example, to add a new item, do as follows:
+     * <pre>
+     *    getPhysiologicalReaction().add(newItem);
+     * </pre>
+     * 
+     * 
+     * <p>
+     * Objects of the following type(s) are allowed in the list
+     * {@link PhysiologicalReactionType }
+     * 
+     * 
+     */
+    public List<PhysiologicalReactionType> getPhysiologicalReaction() {
+        if (physiologicalReaction == null) {
+            physiologicalReaction = new ArrayList<PhysiologicalReactionType>();
+        }
+        return this.physiologicalReaction;
+    }
+
+    /**
      * Gets the value of the cofactor property.
      * 
      * <p>