JAL-1713 update from Jalview 2.11.3 develop

[jalview.git] / src / jalview / xml / binding / uniprot / Entry.java

diff --git a/src/jalview/xml/binding/uniprot/Entry.java b/src/jalview/xml/binding/uniprot/Entry.java
index 34a1298..8ca1da7 100644 (file)
--- a/src/jalview/xml/binding/uniprot/Entry.java
+++ b/src/jalview/xml/binding/uniprot/Entry.java
@@ -1,8 +1,8 @@
 //
-// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 
-// See https://eclipse-ee4j.github.io/jaxb-ri 
+// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
+// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
 // Any modifications to this file will be lost upon recompilation of the source schema. 
-// Generated on: 2022.02.07 at 04:44:21 PM GMT 
+// Generated on: 2023.01.31 at 04:07:10 PM GMT 
 //
 
 
@@ -21,46 +21,46 @@ import javax.xml.datatype.XMLGregorianCalendar;
 
 
 /**
- * &lt;p&gt;Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
  * 
- * &lt;p&gt;The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
  * 
- * &lt;pre&gt;
- * &amp;lt;complexType&amp;gt;
- *   &amp;lt;complexContent&amp;gt;
- *     &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
- *       &amp;lt;sequence&amp;gt;
- *         &amp;lt;element name="accession" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/&amp;gt;
- *         &amp;lt;element name="name" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/&amp;gt;
- *         &amp;lt;element name="protein" type="{http://uniprot.org/uniprot}proteinType"/&amp;gt;
- *         &amp;lt;element name="gene" type="{http://uniprot.org/uniprot}geneType" maxOccurs="unbounded" minOccurs="0"/&amp;gt;
- *         &amp;lt;element name="organism" type="{http://uniprot.org/uniprot}organismType"/&amp;gt;
- *         &amp;lt;element name="organismHost" type="{http://uniprot.org/uniprot}organismType" maxOccurs="unbounded" minOccurs="0"/&amp;gt;
- *         &amp;lt;element name="geneLocation" type="{http://uniprot.org/uniprot}geneLocationType" maxOccurs="unbounded" minOccurs="0"/&amp;gt;
- *         &amp;lt;element name="reference" type="{http://uniprot.org/uniprot}referenceType" maxOccurs="unbounded"/&amp;gt;
- *         &amp;lt;element name="comment" type="{http://uniprot.org/uniprot}commentType" maxOccurs="unbounded" minOccurs="0"/&amp;gt;
- *         &amp;lt;element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType" maxOccurs="unbounded" minOccurs="0"/&amp;gt;
- *         &amp;lt;element name="proteinExistence" type="{http://uniprot.org/uniprot}proteinExistenceType"/&amp;gt;
- *         &amp;lt;element name="keyword" type="{http://uniprot.org/uniprot}keywordType" maxOccurs="unbounded" minOccurs="0"/&amp;gt;
- *         &amp;lt;element name="feature" type="{http://uniprot.org/uniprot}featureType" maxOccurs="unbounded" minOccurs="0"/&amp;gt;
- *         &amp;lt;element name="evidence" type="{http://uniprot.org/uniprot}evidenceType" maxOccurs="unbounded" minOccurs="0"/&amp;gt;
- *         &amp;lt;element name="sequence" type="{http://uniprot.org/uniprot}sequenceType"/&amp;gt;
- *       &amp;lt;/sequence&amp;gt;
- *       &amp;lt;attribute name="dataset" use="required"&amp;gt;
- *         &amp;lt;simpleType&amp;gt;
- *           &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&amp;gt;
- *             &amp;lt;enumeration value="Swiss-Prot"/&amp;gt;
- *             &amp;lt;enumeration value="TrEMBL"/&amp;gt;
- *           &amp;lt;/restriction&amp;gt;
- *         &amp;lt;/simpleType&amp;gt;
- *       &amp;lt;/attribute&amp;gt;
- *       &amp;lt;attribute name="created" use="required" type="{http://www.w3.org/2001/XMLSchema}date" /&amp;gt;
- *       &amp;lt;attribute name="modified" use="required" type="{http://www.w3.org/2001/XMLSchema}date" /&amp;gt;
- *       &amp;lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}int" /&amp;gt;
- *     &amp;lt;/restriction&amp;gt;
- *   &amp;lt;/complexContent&amp;gt;
- * &amp;lt;/complexType&amp;gt;
- * &lt;/pre&gt;
+ * <pre>
+ * &lt;complexType>
+ *   &lt;complexContent>
+ *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *       &lt;sequence>
+ *         &lt;element name="accession" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/>
+ *         &lt;element name="name" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/>
+ *         &lt;element name="protein" type="{http://uniprot.org/uniprot}proteinType"/>
+ *         &lt;element name="gene" type="{http://uniprot.org/uniprot}geneType" maxOccurs="unbounded" minOccurs="0"/>
+ *         &lt;element name="organism" type="{http://uniprot.org/uniprot}organismType"/>
+ *         &lt;element name="organismHost" type="{http://uniprot.org/uniprot}organismType" maxOccurs="unbounded" minOccurs="0"/>
+ *         &lt;element name="geneLocation" type="{http://uniprot.org/uniprot}geneLocationType" maxOccurs="unbounded" minOccurs="0"/>
+ *         &lt;element name="reference" type="{http://uniprot.org/uniprot}referenceType" maxOccurs="unbounded"/>
+ *         &lt;element name="comment" type="{http://uniprot.org/uniprot}commentType" maxOccurs="unbounded" minOccurs="0"/>
+ *         &lt;element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType" maxOccurs="unbounded" minOccurs="0"/>
+ *         &lt;element name="proteinExistence" type="{http://uniprot.org/uniprot}proteinExistenceType"/>
+ *         &lt;element name="keyword" type="{http://uniprot.org/uniprot}keywordType" maxOccurs="unbounded" minOccurs="0"/>
+ *         &lt;element name="feature" type="{http://uniprot.org/uniprot}featureType" maxOccurs="unbounded" minOccurs="0"/>
+ *         &lt;element name="evidence" type="{http://uniprot.org/uniprot}evidenceType" maxOccurs="unbounded" minOccurs="0"/>
+ *         &lt;element name="sequence" type="{http://uniprot.org/uniprot}sequenceType"/>
+ *       &lt;/sequence>
+ *       &lt;attribute name="dataset" use="required">
+ *         &lt;simpleType>
+ *           &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string">
+ *             &lt;enumeration value="Swiss-Prot"/>
+ *             &lt;enumeration value="TrEMBL"/>
+ *           &lt;/restriction>
+ *         &lt;/simpleType>
+ *       &lt;/attribute>
+ *       &lt;attribute name="created" use="required" type="{http://www.w3.org/2001/XMLSchema}date" />
+ *       &lt;attribute name="modified" use="required" type="{http://www.w3.org/2001/XMLSchema}date" />
+ *       &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}int" />
+ *     &lt;/restriction>
+ *   &lt;/complexContent>
+ * &lt;/complexType>
+ * </pre>
  * 
  * 
  */
@@ -122,20 +122,20 @@ public class Entry {
     /**
      * Gets the value of the accession property.
      * 
-     * &lt;p&gt;
+     * <p>
      * This accessor method returns a reference to the live list,
      * not a snapshot. Therefore any modification you make to the
      * returned list will be present inside the JAXB object.
-     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the accession property.
+     * This is why there is not a <CODE>set</CODE> method for the accession property.
      * 
-     * &lt;p&gt;
+     * <p>
      * For example, to add a new item, do as follows:
-     * &lt;pre&gt;
+     * <pre>
      *    getAccession().add(newItem);
-     * &lt;/pre&gt;
+     * </pre>
      * 
      * 
-     * &lt;p&gt;
+     * <p>
      * Objects of the following type(s) are allowed in the list
      * {@link String }
      * 
@@ -151,20 +151,20 @@ public class Entry {
     /**
      * Gets the value of the name property.
      * 
-     * &lt;p&gt;
+     * <p>
      * This accessor method returns a reference to the live list,
      * not a snapshot. Therefore any modification you make to the
      * returned list will be present inside the JAXB object.
-     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the name property.
+     * This is why there is not a <CODE>set</CODE> method for the name property.
      * 
-     * &lt;p&gt;
+     * <p>
      * For example, to add a new item, do as follows:
-     * &lt;pre&gt;
+     * <pre>
      *    getName().add(newItem);
-     * &lt;/pre&gt;
+     * </pre>
      * 
      * 
-     * &lt;p&gt;
+     * <p>
      * Objects of the following type(s) are allowed in the list
      * {@link String }
      * 
@@ -204,20 +204,20 @@ public class Entry {
     /**
      * Gets the value of the gene property.
      * 
-     * &lt;p&gt;
+     * <p>
      * This accessor method returns a reference to the live list,
      * not a snapshot. Therefore any modification you make to the
      * returned list will be present inside the JAXB object.
-     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the gene property.
+     * This is why there is not a <CODE>set</CODE> method for the gene property.
      * 
-     * &lt;p&gt;
+     * <p>
      * For example, to add a new item, do as follows:
-     * &lt;pre&gt;
+     * <pre>
      *    getGene().add(newItem);
-     * &lt;/pre&gt;
+     * </pre>
      * 
      * 
-     * &lt;p&gt;
+     * <p>
      * Objects of the following type(s) are allowed in the list
      * {@link GeneType }
      * 
@@ -257,20 +257,20 @@ public class Entry {
     /**
      * Gets the value of the organismHost property.
      * 
-     * &lt;p&gt;
+     * <p>
      * This accessor method returns a reference to the live list,
      * not a snapshot. Therefore any modification you make to the
      * returned list will be present inside the JAXB object.
-     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the organismHost property.
+     * This is why there is not a <CODE>set</CODE> method for the organismHost property.
      * 
-     * &lt;p&gt;
+     * <p>
      * For example, to add a new item, do as follows:
-     * &lt;pre&gt;
+     * <pre>
      *    getOrganismHost().add(newItem);
-     * &lt;/pre&gt;
+     * </pre>
      * 
      * 
-     * &lt;p&gt;
+     * <p>
      * Objects of the following type(s) are allowed in the list
      * {@link OrganismType }
      * 
@@ -286,20 +286,20 @@ public class Entry {
     /**
      * Gets the value of the geneLocation property.
      * 
-     * &lt;p&gt;
+     * <p>
      * This accessor method returns a reference to the live list,
      * not a snapshot. Therefore any modification you make to the
      * returned list will be present inside the JAXB object.
-     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the geneLocation property.
+     * This is why there is not a <CODE>set</CODE> method for the geneLocation property.
      * 
-     * &lt;p&gt;
+     * <p>
      * For example, to add a new item, do as follows:
-     * &lt;pre&gt;
+     * <pre>
      *    getGeneLocation().add(newItem);
-     * &lt;/pre&gt;
+     * </pre>
      * 
      * 
-     * &lt;p&gt;
+     * <p>
      * Objects of the following type(s) are allowed in the list
      * {@link GeneLocationType }
      * 
@@ -315,20 +315,20 @@ public class Entry {
     /**
      * Gets the value of the reference property.
      * 
-     * &lt;p&gt;
+     * <p>
      * This accessor method returns a reference to the live list,
      * not a snapshot. Therefore any modification you make to the
      * returned list will be present inside the JAXB object.
-     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the reference property.
+     * This is why there is not a <CODE>set</CODE> method for the reference property.
      * 
-     * &lt;p&gt;
+     * <p>
      * For example, to add a new item, do as follows:
-     * &lt;pre&gt;
+     * <pre>
      *    getReference().add(newItem);
-     * &lt;/pre&gt;
+     * </pre>
      * 
      * 
-     * &lt;p&gt;
+     * <p>
      * Objects of the following type(s) are allowed in the list
      * {@link ReferenceType }
      * 
@@ -344,20 +344,20 @@ public class Entry {
     /**
      * Gets the value of the comment property.
      * 
-     * &lt;p&gt;
+     * <p>
      * This accessor method returns a reference to the live list,
      * not a snapshot. Therefore any modification you make to the
      * returned list will be present inside the JAXB object.
-     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the comment property.
+     * This is why there is not a <CODE>set</CODE> method for the comment property.
      * 
-     * &lt;p&gt;
+     * <p>
      * For example, to add a new item, do as follows:
-     * &lt;pre&gt;
+     * <pre>
      *    getComment().add(newItem);
-     * &lt;/pre&gt;
+     * </pre>
      * 
      * 
-     * &lt;p&gt;
+     * <p>
      * Objects of the following type(s) are allowed in the list
      * {@link CommentType }
      * 
@@ -373,20 +373,20 @@ public class Entry {
     /**
      * Gets the value of the dbReference property.
      * 
-     * &lt;p&gt;
+     * <p>
      * This accessor method returns a reference to the live list,
      * not a snapshot. Therefore any modification you make to the
      * returned list will be present inside the JAXB object.
-     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the dbReference property.
+     * This is why there is not a <CODE>set</CODE> method for the dbReference property.
      * 
-     * &lt;p&gt;
+     * <p>
      * For example, to add a new item, do as follows:
-     * &lt;pre&gt;
+     * <pre>
      *    getDbReference().add(newItem);
-     * &lt;/pre&gt;
+     * </pre>
      * 
      * 
-     * &lt;p&gt;
+     * <p>
      * Objects of the following type(s) are allowed in the list
      * {@link DbReferenceType }
      * 
@@ -426,20 +426,20 @@ public class Entry {
     /**
      * Gets the value of the keyword property.
      * 
-     * &lt;p&gt;
+     * <p>
      * This accessor method returns a reference to the live list,
      * not a snapshot. Therefore any modification you make to the
      * returned list will be present inside the JAXB object.
-     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the keyword property.
+     * This is why there is not a <CODE>set</CODE> method for the keyword property.
      * 
-     * &lt;p&gt;
+     * <p>
      * For example, to add a new item, do as follows:
-     * &lt;pre&gt;
+     * <pre>
      *    getKeyword().add(newItem);
-     * &lt;/pre&gt;
+     * </pre>
      * 
      * 
-     * &lt;p&gt;
+     * <p>
      * Objects of the following type(s) are allowed in the list
      * {@link KeywordType }
      * 
@@ -455,20 +455,20 @@ public class Entry {
     /**
      * Gets the value of the feature property.
      * 
-     * &lt;p&gt;
+     * <p>
      * This accessor method returns a reference to the live list,
      * not a snapshot. Therefore any modification you make to the
      * returned list will be present inside the JAXB object.
-     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the feature property.
+     * This is why there is not a <CODE>set</CODE> method for the feature property.
      * 
-     * &lt;p&gt;
+     * <p>
      * For example, to add a new item, do as follows:
-     * &lt;pre&gt;
+     * <pre>
      *    getFeature().add(newItem);
-     * &lt;/pre&gt;
+     * </pre>
      * 
      * 
-     * &lt;p&gt;
+     * <p>
      * Objects of the following type(s) are allowed in the list
      * {@link FeatureType }
      * 
@@ -484,20 +484,20 @@ public class Entry {
     /**
      * Gets the value of the evidence property.
      * 
-     * &lt;p&gt;
+     * <p>
      * This accessor method returns a reference to the live list,
      * not a snapshot. Therefore any modification you make to the
      * returned list will be present inside the JAXB object.
-     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the evidence property.
+     * This is why there is not a <CODE>set</CODE> method for the evidence property.
      * 
-     * &lt;p&gt;
+     * <p>
      * For example, to add a new item, do as follows:
-     * &lt;pre&gt;
+     * <pre>
      *    getEvidence().add(newItem);
-     * &lt;/pre&gt;
+     * </pre>
      * 
      * 
-     * &lt;p&gt;
+     * <p>
      * Objects of the following type(s) are allowed in the list
      * {@link EvidenceType }
      *