* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
-package MCview;
+package mc_view;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.DBRefSource;
}
Atom tmpatom = new Atom(line);
- try
+ if (tmpatom.resNumIns.trim().equals(lastID))
+ {
+ // phosphorylated protein - seen both CA and P..
+ continue;
+ }
+ tmpchain = findChain(tmpatom.chain);
+ if (tmpchain != null)
{
- tmpchain = findChain(tmpatom.chain);
- if (tmpatom.resNumIns.trim().equals(lastID))
- {
- // phosphorylated protein - seen both CA and P..
- continue;
- }
tmpchain.atoms.addElement(tmpatom);
- } catch (Exception e)
+ } else
{
tmpchain = new PDBChain(getId(), tmpatom.chain);
getChains().add(tmpchain);