+++ /dev/null
-/*
- * BioJava development code
- *
- * This code may be freely distributed and modified under the
- * terms of the GNU Lesser General Public Licence. This should
- * be distributed with the code. If you do not have a copy,
- * see:
- *
- * http://www.gnu.org/copyleft/lesser.html
- *
- * Copyright for this code is held jointly by the individual
- * authors. These should be listed in @author doc comments.
- *
- * For more information on the BioJava project and its aims,
- * or to join the biojava-l mailing list, visit the home page
- * at:
- *
- * http://www.biojava.org/
- *
- * Created on Mar 23, 2006
- *
- */
-package org.biojava.dasobert.das2;
-
-// import org.biojava.bio.program.das.dasalignment.DASException;
-import org.biojava.dasobert.dasregistry.*;
-
-public class DasSourceConverter
-{
-
- public DasSourceConverter()
- {
- super();
-
- }
-
- /**
- * convert a das2 source to a das 1 source. This only will work if is passes
- * the Das2Source.isDas1Source() test i.e. this is really a das1 server there
- *
- * @param das2source
- * a DAS2Source to be converted
- * @return a Das1Source
- * @throws DASException
- */
- public static Das1Source toDas1Source(Das2Source das2source)
- throws Exception
- {
- if (!das2source.hasDas1Capabilities())
- {
- throw new Exception(
- "this das source does not have das1 capabilitites");
- }
-
- Das1Source ds = new Das1Source();
- ds.setAdminemail(das2source.getAdminemail());
- ds.setDescription(das2source.getDescription());
- ds.setHelperurl(das2source.getHelperurl());
- ds.setRegisterDate(das2source.getRegisterDate());
- ds.setLeaseDate(das2source.getLeaseDate());
- ds.setLabels(das2source.getLabels());
- ds.setCoordinateSystem(das2source.getCoordinateSystem());
- ds.setNickname(das2source.getNickname());
- ds.setId(das2source.getId());
- ds.setLabels(das2source.getLabels());
-
- // convert the capabilitites to das1 capabiltities and get the url
- Das2Capability[] caps = das2source.getDas2Capabilities();
- String[] das1capabilitites = new String[caps.length];
- int DASPREFIXLENGTH = Das2CapabilityImpl.DAS1_CAPABILITY_PREFIX
- .length();
-
- for (int i = 0; i < caps.length; i++)
- {
- Das2Capability cap = caps[i];
-
- String c = cap.getCapability();
-
- das1capabilitites[i] = c.substring(DASPREFIXLENGTH, c.length());
-
- String query_uri = cap.getQueryUri();
-
- String url = query_uri.substring(0,
- (query_uri.length() - c.length() + DASPREFIXLENGTH));
- ds.setUrl(url);
- }
- ds.setCapabilities(das1capabilitites);
-
- return ds;
- }
-
-}