removed all dasobert code and begun to replace with Jdas calls.

[jalview.git] / src / org / biojava / dasobert / dasregistry / DasCoordSysComparator.java

diff --git a/src/org/biojava/dasobert/dasregistry/DasCoordSysComparator.java b/src/org/biojava/dasobert/dasregistry/DasCoordSysComparator.java
deleted file mode 100755 (executable)
index dbae74d..0000000
--- a/src/org/biojava/dasobert/dasregistry/DasCoordSysComparator.java
+++ /dev/null
@@ -1,128 +0,0 @@
-/*
- *                    BioJava development code
- *
- * This code may be freely distributed and modified under the
- * terms of the GNU Lesser General Public Licence.  This should
- * be distributed with the code.  If you do not have a copy,
- * see:
- *
- *      http://www.gnu.org/copyleft/lesser.html
- *
- * Copyright for this code is held jointly by the individual
- * authors.  These should be listed in @author doc comments.
- *
- * For more information on the BioJava project and its aims,
- * or to join the biojava-l mailing list, visit the home page
- * at:
- *
- *      http://www.biojava.org/
- *
- * Created on 15.04.2004
- * @author Andreas Prlic
- *
- */
-
-package org.biojava.dasobert.dasregistry;
-
-import java.util.*;
-
-/**
- * a comparator to sort DasSources
- * 
- * @author Andreas Prlic
- */
-
-public abstract class DasCoordSysComparator implements Comparator
-{
-
-  private final String name;
-
-  private static final Map COMPS_BY_NAME;
-
-  public DasCoordSysComparator(String str)
-  {
-    // System.out.println("new dasSourceComparator " + str);
-    name = str;
-  }
-
-  public static final Comparator BY_NAME = new DasCoordSysComparator("name")
-  {
-    protected Comparable getField(DasCoordinateSystem ds)
-    {
-      return ds.getName();
-    }
-  };
-
-  public static final Comparator BY_ID = new DasCoordSysComparator("id")
-  {
-    protected Comparable getField(DasCoordinateSystem ds)
-    {
-      return ds.getUniqueId();
-    }
-  };
-
-  public static final Comparator BY_CATEGORY = new DasCoordSysComparator(
-          "category")
-  {
-    protected Comparable getField(DasCoordinateSystem ds)
-    {
-      return ds.getCategory();
-    }
-  };
-
-  public static final Comparator BY_ORGANISM = new DasCoordSysComparator(
-          "organism")
-  {
-    protected Comparable getField(DasCoordinateSystem ds)
-    {
-      return ds.getOrganismName();
-    }
-  };
-
-  public static final Comparator BY_TAXID = new DasCoordSysComparator(
-          "taxid")
-  {
-    protected Comparable getField(DasCoordinateSystem ds)
-    {
-      return ds.getNCBITaxId() + "";
-    }
-  };
-
-  static
-  {
-    COMPS_BY_NAME = new HashMap();
-    COMPS_BY_NAME.put(BY_ID.toString(), BY_ID);
-    COMPS_BY_NAME.put(BY_NAME.toString(), BY_NAME);
-    COMPS_BY_NAME.put(BY_CATEGORY.toString(), BY_CATEGORY);
-    COMPS_BY_NAME.put(BY_ORGANISM.toString(), BY_ORGANISM);
-    COMPS_BY_NAME.put(BY_TAXID.toString(), BY_TAXID);
-  }
-
-  public static Comparator fromString(String name)
-  {
-    if (COMPS_BY_NAME.containsKey(name))
-    {
-      return (Comparator) COMPS_BY_NAME.get(name);
-    }
-    else
-    {
-      throw new IllegalArgumentException("Can't compare by key " + name);
-    }
-  }
-
-  protected abstract Comparable getField(DasCoordinateSystem ds);
-
-  /** compare two DasCoordSys objects */
-  public int compare(Object a, Object b)
-  {
-    DasCoordinateSystem x = (DasCoordinateSystem) a;
-    DasCoordinateSystem y = (DasCoordinateSystem) b;
-    return getField(x).compareTo(getField(y));
-  }
-
-  public String toString()
-  {
-    return name;
-  }
-
-}