removed all dasobert code and begun to replace with Jdas calls.

[jalview.git] / src / org / biojava / dasobert / feature / FeatureComparator.java

diff --git a/src/org/biojava/dasobert/feature/FeatureComparator.java b/src/org/biojava/dasobert/feature/FeatureComparator.java
deleted file mode 100644 (file)
index 2b75c22..0000000
--- a/src/org/biojava/dasobert/feature/FeatureComparator.java
+++ /dev/null
@@ -1,87 +0,0 @@
-/*
- *                    BioJava development code
- *
- * This code may be freely distributed and modified under the
- * terms of the GNU Lesser General Public Licence.  This should
- * be distributed with the code.  If you do not have a copy,
- * see:
- *
- *      http://www.gnu.org/copyleft/lesser.html
- *
- * Copyright for this code is held jointly by the individual
- * authors.  These should be listed in @author doc comments.
- *
- * For more information on the BioJava project and its aims,
- * or to join the biojava-l mailing list, visit the home page
- * at:
- *
- *      http://www.biojava.org/
- *
- * Created on 23.09.2004
- * @author Andreas Prlic
- *
- */
-
-package org.biojava.dasobert.feature;
-
-import java.util.Comparator;
-import java.util.Iterator;
-import java.util.List;
-
-/**
- * a comparator to sort Features byt type
- * 
- * @author Andreas Prlic
- */
-
-public class FeatureComparator implements Comparator
-{
-
-  public FeatureComparator()
-  {
-  }
-
-  public int compare(Object a, Object b)
-  {
-    FeatureTrack x = (FeatureTrack) a;
-    FeatureTrack y = (FeatureTrack) b;
-
-    String typea = x.getType();
-    String typeb = y.getType();
-
-    if (!typea.equals(typeb))
-      return typea.compareTo(typeb);
-
-    List s1 = x.getSegments();
-    List s2 = y.getSegments();
-
-    Iterator iter1 = s1.iterator();
-    Iterator iter2 = s2.iterator();
-
-    while (iter1.hasNext())
-    {
-      Segment seg1 = (Segment) iter1.next();
-      int start1 = seg1.getStart();
-
-      while (iter2.hasNext())
-      {
-        Segment seg2 = (Segment) iter2.next();
-        int start2 = seg2.getStart();
-
-        if (start1 < start2)
-        {
-          return -1;
-        }
-        if (start1 > start2)
-        {
-          return 1;
-        }
-
-      }
-    }
-
-    return 0;
-
-  }
-
-}