removed all dasobert code and begun to replace with Jdas calls.

[jalview.git] / src / org / biojava / dasobert / feature / FeatureTrack.java

diff --git a/src/org/biojava/dasobert/feature/FeatureTrack.java b/src/org/biojava/dasobert/feature/FeatureTrack.java
deleted file mode 100644 (file)
index e7b6bbd..0000000
--- a/src/org/biojava/dasobert/feature/FeatureTrack.java
+++ /dev/null
@@ -1,127 +0,0 @@
-/*
- *                  BioJava development code
- *
- * This code may be freely distributed and modified under the
- * terms of the GNU Lesser General Public Licence.  This should
- * be distributed with the code.  If you do not have a copy,
- * see:
- *
- *      http://www.gnu.org/copyleft/lesser.html
- *
- * Copyright for this code is held jointly by the individual
- * authors.  These should be listed in @author doc comments.
- *
- * For more information on the BioJava project and its aims,
- * or to join the biojava-l mailing list, visit the home page
- * at:
- *
- *      http://www.biojava.org/
- * 
- * Created on Feb 9, 2005
- *
- */
-package org.biojava.dasobert.feature;
-
-import java.util.List;
-
-/**
- * A feature corresponds to a track in Ensembl
- * 
- * @author Andreas Prlic
- * 
- */
-public interface FeatureTrack
-{
-
-  public Object clone();
-
-  /**
-   * returns true if the specified sequence position is within the range of this
-   * Feature
-   * 
-   * @param seqPosition
-   *                the position to check
-   * @return true if the position is within the ranges of the segments of this
-   *         feature
-   */
-  public boolean overlaps(int seqPosition);
-
-  public String toString();
-
-  public void setSource(String s);
-
-  public String getSource();
-
-  public void setName(String nam);
-
-  public String getName();
-
-  public void setMethod(String methd);
-
-  public String getMethod();
-
-  public void setType(String typ);
-
-  public String getType();
-
-  public void setNote(String nte);
-
-  public String getNote();
-
-  public void setLink(String lnk);
-
-  public String getLink();
-
-  public void setScore(String score);
-
-  public String getScore();
-
-  public void setOrientation(String orientation);
-
-  public String getOrientation();
-
-  /**
-   * test if two features are equivalent
-   * 
-   * @param feat
-   *                feature to compare with
-   * @return true if equivalend
-   */
-  public abstract boolean equals(FeatureTrack feat);
-
-  /**
-   * add a segment to this feature
-   * 
-   * @param start
-   *                position
-   * @param end
-   *                position
-   * @param name
-   *                of feature
-   */
-  public abstract void addSegment(int start, int end, String name);
-
-  public abstract void addSegment(Segment s);
-
-  public abstract List getSegments();
-
-  /**
-   * set the data from the DAS - type - id field (used for Ontology support)
-   * 
-   * @param typeID
-   */
-  public void setTypeID(String typeID);
-
-  /**
-   * set the data from the DAS - type - category field (used for Ontology
-   * support)
-   * 
-   * @param typeCategory
-   */
-  public void setTypeCategory(String typeCategory);
-
-  public String getTypeID();
-
-  public String getTypeCategory();
-
-}
\ No newline at end of file