updated jalview version of dasobert 1.53e client and added Das Sequence Source discov...

[jalview.git] / src / org / biojava / dasobert / feature / FeatureTrackImpl.java

diff --git a/src/org/biojava/dasobert/feature/FeatureTrackImpl.java b/src/org/biojava/dasobert/feature/FeatureTrackImpl.java
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+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ * Created on 22.09.2004
+ * @author Andreas Prlic
+ *
+ */
+
+package org.biojava.dasobert.feature;
+
+import java.util.Iterator;
+
+/** a class to store FeatureData and to visualize them
+ * coordinate system of features is always UniProt !
+ * PDBresnum features served by DAS need to be converted into UniProt coord sys first.
+ *
+ * a feature consists of one or several segments.
+ * segmetns cotnains <start> and <end> information.
+ *
+ * @author Andreas Prlic
+ */
+public class FeatureTrackImpl 
+extends AbstractFeatureTrack
+implements FeatureTrack
+
+{
+   
+       
+        public Object clone(){
+               
+               FeatureTrack f = new FeatureTrackImpl();
+               f.setName(name);
+               f.setMethod(method);
+               f.setType(type);
+               f.setNote(note);
+               f.setLink(link);
+               f.setSource(source);
+               f.setScore(score);
+               
+               Iterator iter = segments.iterator();
+               
+               while (iter.hasNext()){
+                       Segment s = (Segment) iter.next();
+                       f.addSegment((Segment)s.clone());
+               }
+               
+               return f;
+               
+           }
+
+       
+       
+}
+
+
+
+