removed all dasobert code and begun to replace with Jdas calls.

[jalview.git] / src / org / biojava / dasobert / feature / HistogramFeature.java

diff --git a/src/org/biojava/dasobert/feature/HistogramFeature.java b/src/org/biojava/dasobert/feature/HistogramFeature.java
deleted file mode 100644 (file)
index 8663081..0000000
--- a/src/org/biojava/dasobert/feature/HistogramFeature.java
+++ /dev/null
@@ -1,95 +0,0 @@
-/*
- *                  BioJava development code
- *
- * This code may be freely distributed and modified under the
- * terms of the GNU Lesser General Public Licence.  This should
- * be distributed with the code.  If you do not have a copy,
- * see:
- *
- *      http://www.gnu.org/copyleft/lesser.html
- *
- * Copyright for this code is held jointly by the individual
- * authors.  These should be listed in @author doc comments.
- *
- * For more information on the BioJava project and its aims,
- * or to join the biojava-l mailing list, visit the home page
- * at:
- *
- *      http://www.biojava.org/
- * 
- * Created on May 22, 2007
- * 
- */
-
-package org.biojava.dasobert.feature;
-
-import java.util.Iterator;
-
-/**
- * a class that represents Histogram Style features in addition to normal
- * features they know about Max and Minimum scores for the whole line Histogram
- * feautes have only one (Histogram) Segment, which contains the scores for each
- * position
- * 
- * @author Andreas Prlic
- * 
- */
-public class HistogramFeature extends AbstractFeatureTrack
-{
-
-  double max;
-
-  double min;
-
-  public HistogramFeature()
-  {
-    super();
-    // TODO Auto-generated constructor stub
-  }
-
-  public double getMax()
-  {
-    return max;
-  }
-
-  public void setMax(double max)
-  {
-    this.max = max;
-  }
-
-  public double getMin()
-  {
-    return min;
-  }
-
-  public void setMin(double min)
-  {
-    this.min = min;
-  }
-
-  public Object clone()
-  {
-
-    HistogramFeature f = new HistogramFeature();
-
-    f.setName(name);
-    f.setMethod(method);
-    f.setType(type);
-    f.setNote(note);
-    f.setLink(link);
-    f.setSource(source);
-    f.setScore(score);
-
-    Iterator iter = segments.iterator();
-
-    while (iter.hasNext())
-    {
-      Segment s = (Segment) iter.next();
-      f.addSegment((Segment) s.clone());
-    }
-
-    return f;
-
-  }
-
-}