sequence mappings and DbRef mapping objects unified and source binding for castor...
[vamsas.git] / src / uk / ac / vamsas / objects / core / AppData.java
index 857f0a8..d54bca7 100644 (file)
@@ -1,6 +1,6 @@
 /*\r
  * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML\r
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML\r
  * Schema.\r
  * $Id$\r
  */\r
@@ -11,15 +11,8 @@ package uk.ac.vamsas.objects.core;
  //- Imported classes and packages -/\r
 //---------------------------------/\r
 \r
-import java.io.IOException;\r
-import java.io.Reader;\r
-import java.io.Serializable;\r
-import java.io.Writer;\r
-import org.exolab.castor.xml.MarshalException;\r
 import org.exolab.castor.xml.Marshaller;\r
 import org.exolab.castor.xml.Unmarshaller;\r
-import org.exolab.castor.xml.ValidationException;\r
-import org.xml.sax.ContentHandler;\r
 \r
 /**\r
  * Class AppData.\r
@@ -41,12 +34,12 @@ implements java.io.Serializable
     private java.lang.Object _choiceValue;\r
 \r
     /**\r
-     * Field _data\r
+     * Field _data.\r
      */\r
     private byte[] _data;\r
 \r
     /**\r
-     * Field _dataReference\r
+     * Field _dataReference.\r
      */\r
     private java.lang.String _dataReference;\r
 \r
@@ -55,10 +48,9 @@ implements java.io.Serializable
      //- Constructors -/\r
     //----------------/\r
 \r
-    public AppData() \r
-     {\r
+    public AppData() {\r
         super();\r
-    } //-- uk.ac.vamsas.objects.core.AppData()\r
+    }\r
 \r
 \r
       //-----------/\r
@@ -66,13 +58,13 @@ implements java.io.Serializable
     //-----------/\r
 \r
     /**\r
-     * Note: hashCode() has not been overriden\r
+     * Overrides the java.lang.Object.equals method.\r
      * \r
      * @param obj\r
-     * @return boolean\r
+     * @return true if the objects are equal.\r
      */\r
-    public boolean equals(java.lang.Object obj)\r
-    {\r
+    public boolean equals(\r
+            final java.lang.Object obj) {\r
         if ( this == obj )\r
             return true;\r
         \r
@@ -82,158 +74,239 @@ implements java.io.Serializable
         if (obj instanceof AppData) {\r
         \r
             AppData temp = (AppData)obj;\r
+            boolean thcycle;\r
+            boolean tmcycle;\r
             if (this._choiceValue != null) {\r
                 if (temp._choiceValue == null) return false;\r
-                else if (!(this._choiceValue.equals(temp._choiceValue))) \r
-                    return false;\r
-            }\r
-            else if (temp._choiceValue != null)\r
+                if (this._choiceValue != temp._choiceValue) {\r
+                    thcycle=org.castor.util.CycleBreaker.startingToCycle(this._choiceValue);\r
+                    tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._choiceValue);\r
+                    if (thcycle!=tmcycle) {\r
+                        if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._choiceValue); };\r
+                        if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._choiceValue); };\r
+                        return false;\r
+                    }\r
+                    if (!thcycle) {\r
+                        if (!this._choiceValue.equals(temp._choiceValue)) {\r
+                            org.castor.util.CycleBreaker.releaseCycleHandle(this._choiceValue);\r
+                            org.castor.util.CycleBreaker.releaseCycleHandle(temp._choiceValue);\r
+                            return false;\r
+                        }\r
+                        org.castor.util.CycleBreaker.releaseCycleHandle(this._choiceValue);\r
+                        org.castor.util.CycleBreaker.releaseCycleHandle(temp._choiceValue);\r
+                    }\r
+                }\r
+            } else if (temp._choiceValue != null)\r
                 return false;\r
             if (this._data != null) {\r
                 if (temp._data == null) return false;\r
-                else if (!(this._data.equals(temp._data))) \r
-                    return false;\r
-            }\r
-            else if (temp._data != null)\r
+                if (this._data != temp._data) {\r
+                    thcycle=org.castor.util.CycleBreaker.startingToCycle(this._data);\r
+                    tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._data);\r
+                    if (thcycle!=tmcycle) {\r
+                        if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._data); };\r
+                        if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._data); };\r
+                        return false;\r
+                    }\r
+                    if (!thcycle) {\r
+                        if (!java.util.Arrays.equals(this._data, temp._data)) {\r
+                            org.castor.util.CycleBreaker.releaseCycleHandle(this._data);\r
+                            org.castor.util.CycleBreaker.releaseCycleHandle(temp._data);\r
+                            return false;\r
+                        }\r
+                        org.castor.util.CycleBreaker.releaseCycleHandle(this._data);\r
+                        org.castor.util.CycleBreaker.releaseCycleHandle(temp._data);\r
+                    }\r
+                }\r
+            } else if (temp._data != null)\r
                 return false;\r
             if (this._dataReference != null) {\r
                 if (temp._dataReference == null) return false;\r
-                else if (!(this._dataReference.equals(temp._dataReference))) \r
-                    return false;\r
-            }\r
-            else if (temp._dataReference != null)\r
+                if (this._dataReference != temp._dataReference) {\r
+                    thcycle=org.castor.util.CycleBreaker.startingToCycle(this._dataReference);\r
+                    tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._dataReference);\r
+                    if (thcycle!=tmcycle) {\r
+                        if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._dataReference); };\r
+                        if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._dataReference); };\r
+                        return false;\r
+                    }\r
+                    if (!thcycle) {\r
+                        if (!this._dataReference.equals(temp._dataReference)) {\r
+                            org.castor.util.CycleBreaker.releaseCycleHandle(this._dataReference);\r
+                            org.castor.util.CycleBreaker.releaseCycleHandle(temp._dataReference);\r
+                            return false;\r
+                        }\r
+                        org.castor.util.CycleBreaker.releaseCycleHandle(this._dataReference);\r
+                        org.castor.util.CycleBreaker.releaseCycleHandle(temp._dataReference);\r
+                    }\r
+                }\r
+            } else if (temp._dataReference != null)\r
                 return false;\r
             return true;\r
         }\r
         return false;\r
-    } //-- boolean equals(java.lang.Object) \r
+    }\r
 \r
     /**\r
      * Returns the value of field 'choiceValue'. The field\r
      * 'choiceValue' has the following description: Internal choice\r
      * value storage\r
      * \r
-     * @return Object\r
-     * @return the value of field 'choiceValue'.\r
+     * @return the value of field 'ChoiceValue'.\r
      */\r
-    public java.lang.Object getChoiceValue()\r
-    {\r
+    public java.lang.Object getChoiceValue(\r
+    ) {\r
         return this._choiceValue;\r
-    } //-- java.lang.Object getChoiceValue() \r
+    }\r
 \r
     /**\r
      * Returns the value of field 'data'.\r
      * \r
-     * @return byte\r
-     * @return the value of field 'data'.\r
+     * @return the value of field 'Data'.\r
      */\r
-    public byte[] getData()\r
-    {\r
+    public byte[] getData(\r
+    ) {\r
         return this._data;\r
-    } //-- byte[] getData() \r
+    }\r
 \r
     /**\r
      * Returns the value of field 'dataReference'.\r
      * \r
-     * @return String\r
-     * @return the value of field 'dataReference'.\r
+     * @return the value of field 'DataReference'.\r
      */\r
-    public java.lang.String getDataReference()\r
-    {\r
+    public java.lang.String getDataReference(\r
+    ) {\r
         return this._dataReference;\r
-    } //-- java.lang.String getDataReference() \r
+    }\r
 \r
     /**\r
-     * Method isValid\r
-     * \r
+     * Overrides the java.lang.Object.hashCode method.\r
+     * <p>\r
+     * The following steps came from <b>Effective Java Programming\r
+     * Language Guide</b> by Joshua Bloch, Chapter 3\r
      * \r
+     * @return a hash code value for the object.\r
+     */\r
+    public int hashCode(\r
+    ) {\r
+        int result = super.hashCode();\r
+        \r
+        long tmp;\r
+        if (_choiceValue != null\r
+            && !org.castor.util.CycleBreaker.startingToCycle(_choiceValue)) {\r
+           result = 37 * result + _choiceValue.hashCode();\r
+           org.castor.util.CycleBreaker.releaseCycleHandle(_choiceValue);\r
+        }\r
+        if (_data != null\r
+            && !org.castor.util.CycleBreaker.startingToCycle(_data)) {\r
+           result = 37 * result + _data.hashCode();\r
+           org.castor.util.CycleBreaker.releaseCycleHandle(_data);\r
+        }\r
+        if (_dataReference != null\r
+            && !org.castor.util.CycleBreaker.startingToCycle(_dataReference)) {\r
+           result = 37 * result + _dataReference.hashCode();\r
+           org.castor.util.CycleBreaker.releaseCycleHandle(_dataReference);\r
+        }\r
+        \r
+        return result;\r
+    }\r
+\r
+    /**\r
+     * Method isValid.\r
      * \r
-     * @return boolean\r
+     * @return true if this object is valid according to the schema\r
      */\r
-    public boolean isValid()\r
-    {\r
+    public boolean isValid(\r
+    ) {\r
         try {\r
             validate();\r
-        }\r
-        catch (org.exolab.castor.xml.ValidationException vex) {\r
+        } catch (org.exolab.castor.xml.ValidationException vex) {\r
             return false;\r
         }\r
         return true;\r
-    } //-- boolean isValid() \r
+    }\r
 \r
     /**\r
-     * Method marshal\r
-     * \r
      * \r
      * \r
      * @param out\r
+     * @throws org.exolab.castor.xml.MarshalException if object is\r
+     * null or if any SAXException is thrown during marshaling\r
+     * @throws org.exolab.castor.xml.ValidationException if this\r
+     * object is an invalid instance according to the schema\r
      */\r
-    public void marshal(java.io.Writer out)\r
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
-    {\r
-        \r
+    public void marshal(\r
+            final java.io.Writer out)\r
+    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
         Marshaller.marshal(this, out);\r
-    } //-- void marshal(java.io.Writer) \r
+    }\r
 \r
     /**\r
-     * Method marshal\r
-     * \r
      * \r
      * \r
      * @param handler\r
+     * @throws java.io.IOException if an IOException occurs during\r
+     * marshaling\r
+     * @throws org.exolab.castor.xml.ValidationException if this\r
+     * object is an invalid instance according to the schema\r
+     * @throws org.exolab.castor.xml.MarshalException if object is\r
+     * null or if any SAXException is thrown during marshaling\r
      */\r
-    public void marshal(org.xml.sax.ContentHandler handler)\r
-        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
-    {\r
-        \r
+    public void marshal(\r
+            final org.xml.sax.ContentHandler handler)\r
+    throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
         Marshaller.marshal(this, handler);\r
-    } //-- void marshal(org.xml.sax.ContentHandler) \r
+    }\r
 \r
     /**\r
      * Sets the value of field 'data'.\r
      * \r
      * @param data the value of field 'data'.\r
      */\r
-    public void setData(byte[] data)\r
-    {\r
+    public void setData(\r
+            final byte[] data) {\r
         this._data = data;\r
         this._choiceValue = data;\r
-    } //-- void setData(byte) \r
+    }\r
 \r
     /**\r
      * Sets the value of field 'dataReference'.\r
      * \r
      * @param dataReference the value of field 'dataReference'.\r
      */\r
-    public void setDataReference(java.lang.String dataReference)\r
-    {\r
+    public void setDataReference(\r
+            final java.lang.String dataReference) {\r
         this._dataReference = dataReference;\r
         this._choiceValue = dataReference;\r
-    } //-- void setDataReference(java.lang.String) \r
+    }\r
 \r
     /**\r
-     * Method unmarshal\r
-     * \r
-     * \r
+     * Method unmarshal.\r
      * \r
      * @param reader\r
-     * @return AppData\r
+     * @throws org.exolab.castor.xml.MarshalException if object is\r
+     * null or if any SAXException is thrown during marshaling\r
+     * @throws org.exolab.castor.xml.ValidationException if this\r
+     * object is an invalid instance according to the schema\r
+     * @return the unmarshaled uk.ac.vamsas.objects.core.AppData\r
      */\r
-    public static uk.ac.vamsas.objects.core.AppData unmarshal(java.io.Reader reader)\r
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
-    {\r
+    public static uk.ac.vamsas.objects.core.AppData unmarshal(\r
+            final java.io.Reader reader)\r
+    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
         return (uk.ac.vamsas.objects.core.AppData) Unmarshaller.unmarshal(uk.ac.vamsas.objects.core.AppData.class, reader);\r
-    } //-- uk.ac.vamsas.objects.core.AppData unmarshal(java.io.Reader) \r
+    }\r
 \r
     /**\r
-     * Method validate\r
      * \r
+     * \r
+     * @throws org.exolab.castor.xml.ValidationException if this\r
+     * object is an invalid instance according to the schema\r
      */\r
-    public void validate()\r
-        throws org.exolab.castor.xml.ValidationException\r
-    {\r
+    public void validate(\r
+    )\r
+    throws org.exolab.castor.xml.ValidationException {\r
         org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
         validator.validate(this);\r
-    } //-- void validate() \r
+    }\r
 \r
 }\r