sequence mappings and DbRef mapping objects unified and source binding for castor...
[vamsas.git] / src / uk / ac / vamsas / objects / core / MapType.java
diff --git a/src/uk/ac/vamsas/objects/core/MapType.java b/src/uk/ac/vamsas/objects/core/MapType.java
new file mode 100644 (file)
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@@ -0,0 +1,266 @@
+/*\r
+ * This class was automatically generated with \r
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML\r
+ * Schema.\r
+ * $Id$\r
+ */\r
+\r
+package uk.ac.vamsas.objects.core;\r
+\r
+  //---------------------------------/\r
+ //- Imported classes and packages -/\r
+//---------------------------------/\r
+\r
+import org.exolab.castor.xml.Marshaller;\r
+import org.exolab.castor.xml.Unmarshaller;\r
+\r
+/**\r
+ * Two sets of ranges defined between objects - usually sequences,\r
+ * indicating which\r
+ *  regions on each are mapped. \r
+ * \r
+ * @version $Revision$ $Date$\r
+ */\r
+public class MapType extends uk.ac.vamsas.client.Vobject \r
+implements java.io.Serializable\r
+{\r
+\r
+\r
+      //--------------------------/\r
+     //- Class/Member Variables -/\r
+    //--------------------------/\r
+\r
+    /**\r
+     */\r
+    private uk.ac.vamsas.objects.core.Local _local;\r
+\r
+    /**\r
+     */\r
+    private uk.ac.vamsas.objects.core.Mapped _mapped;\r
+\r
+\r
+      //----------------/\r
+     //- Constructors -/\r
+    //----------------/\r
+\r
+    public MapType() {\r
+        super();\r
+    }\r
+\r
+\r
+      //-----------/\r
+     //- Methods -/\r
+    //-----------/\r
+\r
+    /**\r
+     * Overrides the java.lang.Object.equals method.\r
+     * \r
+     * @param obj\r
+     * @return true if the objects are equal.\r
+     */\r
+    public boolean equals(\r
+            final java.lang.Object obj) {\r
+        if ( this == obj )\r
+            return true;\r
+        \r
+        if (super.equals(obj)==false)\r
+            return false;\r
+        \r
+        if (obj instanceof MapType) {\r
+        \r
+            MapType temp = (MapType)obj;\r
+            boolean thcycle;\r
+            boolean tmcycle;\r
+            if (this._local != null) {\r
+                if (temp._local == null) return false;\r
+                if (this._local != temp._local) {\r
+                    thcycle=org.castor.util.CycleBreaker.startingToCycle(this._local);\r
+                    tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._local);\r
+                    if (thcycle!=tmcycle) {\r
+                        if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._local); };\r
+                        if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._local); };\r
+                        return false;\r
+                    }\r
+                    if (!thcycle) {\r
+                        if (!this._local.equals(temp._local)) {\r
+                            org.castor.util.CycleBreaker.releaseCycleHandle(this._local);\r
+                            org.castor.util.CycleBreaker.releaseCycleHandle(temp._local);\r
+                            return false;\r
+                        }\r
+                        org.castor.util.CycleBreaker.releaseCycleHandle(this._local);\r
+                        org.castor.util.CycleBreaker.releaseCycleHandle(temp._local);\r
+                    }\r
+                }\r
+            } else if (temp._local != null)\r
+                return false;\r
+            if (this._mapped != null) {\r
+                if (temp._mapped == null) return false;\r
+                if (this._mapped != temp._mapped) {\r
+                    thcycle=org.castor.util.CycleBreaker.startingToCycle(this._mapped);\r
+                    tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._mapped);\r
+                    if (thcycle!=tmcycle) {\r
+                        if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._mapped); };\r
+                        if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._mapped); };\r
+                        return false;\r
+                    }\r
+                    if (!thcycle) {\r
+                        if (!this._mapped.equals(temp._mapped)) {\r
+                            org.castor.util.CycleBreaker.releaseCycleHandle(this._mapped);\r
+                            org.castor.util.CycleBreaker.releaseCycleHandle(temp._mapped);\r
+                            return false;\r
+                        }\r
+                        org.castor.util.CycleBreaker.releaseCycleHandle(this._mapped);\r
+                        org.castor.util.CycleBreaker.releaseCycleHandle(temp._mapped);\r
+                    }\r
+                }\r
+            } else if (temp._mapped != null)\r
+                return false;\r
+            return true;\r
+        }\r
+        return false;\r
+    }\r
+\r
+    /**\r
+     * Returns the value of field 'local'.\r
+     * \r
+     * @return the value of field 'Local'.\r
+     */\r
+    public uk.ac.vamsas.objects.core.Local getLocal(\r
+    ) {\r
+        return this._local;\r
+    }\r
+\r
+    /**\r
+     * Returns the value of field 'mapped'.\r
+     * \r
+     * @return the value of field 'Mapped'.\r
+     */\r
+    public uk.ac.vamsas.objects.core.Mapped getMapped(\r
+    ) {\r
+        return this._mapped;\r
+    }\r
+\r
+    /**\r
+     * Overrides the java.lang.Object.hashCode method.\r
+     * <p>\r
+     * The following steps came from <b>Effective Java Programming\r
+     * Language Guide</b> by Joshua Bloch, Chapter 3\r
+     * \r
+     * @return a hash code value for the object.\r
+     */\r
+    public int hashCode(\r
+    ) {\r
+        int result = super.hashCode();\r
+        \r
+        long tmp;\r
+        if (_local != null\r
+            && !org.castor.util.CycleBreaker.startingToCycle(_local)) {\r
+           result = 37 * result + _local.hashCode();\r
+           org.castor.util.CycleBreaker.releaseCycleHandle(_local);\r
+        }\r
+        if (_mapped != null\r
+            && !org.castor.util.CycleBreaker.startingToCycle(_mapped)) {\r
+           result = 37 * result + _mapped.hashCode();\r
+           org.castor.util.CycleBreaker.releaseCycleHandle(_mapped);\r
+        }\r
+        \r
+        return result;\r
+    }\r
+\r
+    /**\r
+     * Method isValid.\r
+     * \r
+     * @return true if this object is valid according to the schema\r
+     */\r
+    public boolean isValid(\r
+    ) {\r
+        try {\r
+            validate();\r
+        } catch (org.exolab.castor.xml.ValidationException vex) {\r
+            return false;\r
+        }\r
+        return true;\r
+    }\r
+\r
+    /**\r
+     * \r
+     * \r
+     * @param out\r
+     * @throws org.exolab.castor.xml.MarshalException if object is\r
+     * null or if any SAXException is thrown during marshaling\r
+     * @throws org.exolab.castor.xml.ValidationException if this\r
+     * object is an invalid instance according to the schema\r
+     */\r
+    public void marshal(\r
+            final java.io.Writer out)\r
+    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
+        Marshaller.marshal(this, out);\r
+    }\r
+\r
+    /**\r
+     * \r
+     * \r
+     * @param handler\r
+     * @throws java.io.IOException if an IOException occurs during\r
+     * marshaling\r
+     * @throws org.exolab.castor.xml.ValidationException if this\r
+     * object is an invalid instance according to the schema\r
+     * @throws org.exolab.castor.xml.MarshalException if object is\r
+     * null or if any SAXException is thrown during marshaling\r
+     */\r
+    public void marshal(\r
+            final org.xml.sax.ContentHandler handler)\r
+    throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
+        Marshaller.marshal(this, handler);\r
+    }\r
+\r
+    /**\r
+     * Sets the value of field 'local'.\r
+     * \r
+     * @param local the value of field 'local'.\r
+     */\r
+    public void setLocal(\r
+            final uk.ac.vamsas.objects.core.Local local) {\r
+        this._local = local;\r
+    }\r
+\r
+    /**\r
+     * Sets the value of field 'mapped'.\r
+     * \r
+     * @param mapped the value of field 'mapped'.\r
+     */\r
+    public void setMapped(\r
+            final uk.ac.vamsas.objects.core.Mapped mapped) {\r
+        this._mapped = mapped;\r
+    }\r
+\r
+    /**\r
+     * Method unmarshal.\r
+     * \r
+     * @param reader\r
+     * @throws org.exolab.castor.xml.MarshalException if object is\r
+     * null or if any SAXException is thrown during marshaling\r
+     * @throws org.exolab.castor.xml.ValidationException if this\r
+     * object is an invalid instance according to the schema\r
+     * @return the unmarshaled uk.ac.vamsas.objects.core.MapType\r
+     */\r
+    public static uk.ac.vamsas.objects.core.MapType unmarshal(\r
+            final java.io.Reader reader)\r
+    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
+        return (uk.ac.vamsas.objects.core.MapType) Unmarshaller.unmarshal(uk.ac.vamsas.objects.core.MapType.class, reader);\r
+    }\r
+\r
+    /**\r
+     * \r
+     * \r
+     * @throws org.exolab.castor.xml.ValidationException if this\r
+     * object is an invalid instance according to the schema\r
+     */\r
+    public void validate(\r
+    )\r
+    throws org.exolab.castor.xml.ValidationException {\r
+        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
+        validator.validate(this);\r
+    }\r
+\r
+}\r