sequence mappings and DbRef mapping objects unified and source binding for castor...

[vamsas.git] / src / uk / ac / vamsas / objects / core / descriptors / AlignmentAnnotationDescriptor.java

diff --git a/src/uk/ac/vamsas/objects/core/descriptors/AlignmentAnnotationDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/AlignmentAnnotationDescriptor.java
index f1d89d8..3edd3e3 100644 (file)
--- a/src/uk/ac/vamsas/objects/core/descriptors/AlignmentAnnotationDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/AlignmentAnnotationDescriptor.java
@@ -45,11 +45,6 @@ public class AlignmentAnnotationDescriptor extends uk.ac.vamsas.objects.core.des
      */\r
     private java.lang.String _xmlName;\r
 \r
-    /**\r
-     * Field _identity.\r
-     */\r
-    private org.exolab.castor.xml.XMLFieldDescriptor _identity;\r
-\r
 \r
       //----------------/\r
      //- Constructors -/\r
@@ -110,6 +105,52 @@ public class AlignmentAnnotationDescriptor extends uk.ac.vamsas.objects.core.des
             fieldValidator.setValidator(typeValidator);\r
         }\r
         desc.setValidator(fieldValidator);\r
+        //-- _seqrefs\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Object.class, "_seqrefs", "seqrefs", org.exolab.castor.xml.NodeType.Attribute);\r
+        desc.setReference(true);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                AlignmentAnnotation target = (AlignmentAnnotation) object;\r
+                return target.getSeqrefs();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    AlignmentAnnotation target = (AlignmentAnnotation) object;\r
+                    target.addSeqrefs( (java.lang.Object) value);\r
+                } catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
+                try {\r
+                    AlignmentAnnotation target = (AlignmentAnnotation) object;\r
+                    target.removeAllSeqrefs();\r
+                } catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance(java.lang.Object parent) {\r
+                return new java.lang.Object();\r
+            }\r
+        };\r
+        desc.setMultivalued(true);\r
+        desc.setHandler(handler);\r
+        desc.setMultivalued(true);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _seqrefs\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        fieldValidator.setMinOccurs(0);\r
+        { //-- local scope\r
+            org.exolab.castor.xml.validators.IdRefsValidator typeValidator = new org.exolab.castor.xml.validators.IdRefsValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+            desc.setValidator(fieldValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
         //-- initialize element descriptors\r
         \r
         //-- _provenance\r
@@ -172,10 +213,7 @@ public class AlignmentAnnotationDescriptor extends uk.ac.vamsas.objects.core.des
      */\r
     public org.exolab.castor.mapping.FieldDescriptor getIdentity(\r
     ) {\r
-        if (_identity == null) {\r
-            return super.getIdentity();\r
-        }\r
-        return _identity;\r
+        return super.getIdentity();\r
     }\r
 \r
     /**\r