*/\r
\r
/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
-*/\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+ */\r
package vamsas.objects.simple;\r
\r
-public class SequenceSet implements java.io.Serializable {\r
- private vamsas.objects.simple.Sequence[] seqs;\r
- private java.lang.Object __equalsCalc = null;\r
- private boolean __hashCodeCalc = false;\r
-\r
- public SequenceSet() {\r
+public class SequenceSet\r
+ implements java.io.Serializable\r
+{\r
+ private vamsas.objects.simple.Sequence[] seqs;\r
+ private java.lang.Object __equalsCalc = null;\r
+ private boolean __hashCodeCalc = false;\r
+\r
+ public SequenceSet()\r
+ {\r
+ }\r
+\r
+ public SequenceSet(vamsas.objects.simple.Sequence[] seqs)\r
+ {\r
+ this.seqs = seqs;\r
+ }\r
+\r
+ /**\r
+ * Gets the seqs value for this SequenceSet.\r
+ *\r
+ * @return seqs\r
+ */\r
+ public vamsas.objects.simple.Sequence[] getSeqs()\r
+ {\r
+ return seqs;\r
+ }\r
+\r
+ /**\r
+ * Sets the seqs value for this SequenceSet.\r
+ *\r
+ * @param seqs\r
+ */\r
+ public void setSeqs(vamsas.objects.simple.Sequence[] seqs)\r
+ {\r
+ this.seqs = seqs;\r
+ }\r
+\r
+ public synchronized boolean equals(java.lang.Object obj)\r
+ {\r
+ if (! (obj instanceof SequenceSet))\r
+ {\r
+ return false;\r
}\r
\r
- public SequenceSet(vamsas.objects.simple.Sequence[] seqs) {\r
- this.seqs = seqs;\r
- }\r
+ SequenceSet other = (SequenceSet) obj;\r
\r
- /**\r
- * Gets the seqs value for this SequenceSet.\r
- *\r
- * @return seqs\r
- */\r
- public vamsas.objects.simple.Sequence[] getSeqs() {\r
- return seqs;\r
+ if (obj == null)\r
+ {\r
+ return false;\r
}\r
\r
- /**\r
- * Sets the seqs value for this SequenceSet.\r
- *\r
- * @param seqs\r
- */\r
- public void setSeqs(vamsas.objects.simple.Sequence[] seqs) {\r
- this.seqs = seqs;\r
+ if (this == obj)\r
+ {\r
+ return true;\r
}\r
\r
- public synchronized boolean equals(java.lang.Object obj) {\r
- if (!(obj instanceof SequenceSet)) {\r
- return false;\r
- }\r
-\r
- SequenceSet other = (SequenceSet) obj;\r
-\r
- if (obj == null) {\r
- return false;\r
- }\r
+ if (__equalsCalc != null)\r
+ {\r
+ return (__equalsCalc == obj);\r
+ }\r
\r
- if (this == obj) {\r
- return true;\r
- }\r
+ __equalsCalc = obj;\r
\r
- if (__equalsCalc != null) {\r
- return (__equalsCalc == obj);\r
- }\r
+ boolean _equals;\r
+ _equals = true &&\r
+ ( ( (this.seqs == null) && (other.getSeqs() == null)) ||\r
+ ( (this.seqs != null) &&\r
+ java.util.Arrays.equals(this.seqs, other.getSeqs())));\r
+ __equalsCalc = null;\r
\r
- __equalsCalc = obj;\r
+ return _equals;\r
+ }\r
\r
- boolean _equals;\r
- _equals = true &&\r
- (((this.seqs == null) && (other.getSeqs() == null)) ||\r
- ((this.seqs != null) &&\r
- java.util.Arrays.equals(this.seqs, other.getSeqs())));\r
- __equalsCalc = null;\r
-\r
- return _equals;\r
+ public synchronized int hashCode()\r
+ {\r
+ if (__hashCodeCalc)\r
+ {\r
+ return 0;\r
}\r
\r
- public synchronized int hashCode() {\r
- if (__hashCodeCalc) {\r
- return 0;\r
- }\r
-\r
- __hashCodeCalc = true;\r
+ __hashCodeCalc = true;\r
\r
- int _hashCode = 1;\r
+ int _hashCode = 1;\r
\r
- if (getSeqs() != null) {\r
- for (int i = 0; i < java.lang.reflect.Array.getLength(getSeqs());\r
- i++) {\r
- java.lang.Object obj = java.lang.reflect.Array.get(getSeqs(), i);\r
+ if (getSeqs() != null)\r
+ {\r
+ for (int i = 0; i < java.lang.reflect.Array.getLength(getSeqs());\r
+ i++)\r
+ {\r
+ java.lang.Object obj = java.lang.reflect.Array.get(getSeqs(), i);\r
\r
- if ((obj != null) && !obj.getClass().isArray()) {\r
- _hashCode += obj.hashCode();\r
- }\r
- }\r
+ if ( (obj != null) && !obj.getClass().isArray())\r
+ {\r
+ _hashCode += obj.hashCode();\r
}\r
+ }\r
+ }\r
\r
- __hashCodeCalc = false;\r
+ __hashCodeCalc = false;\r
\r
- return _hashCode;\r
- }\r
+ return _hashCode;\r
+ }\r
}\r
git://source.jalview.org / jalview.git / blobdiff