added SeqSearch service interface. Documented and refactored web service client ...

[jalview.git] / src / vamsas / objects / simple / SequenceSet.java

diff --git a/src/vamsas/objects/simple/SequenceSet.java b/src/vamsas/objects/simple/SequenceSet.java
index 1bb765f..62e58b4 100755 (executable)
--- a/src/vamsas/objects/simple/SequenceSet.java
+++ b/src/vamsas/objects/simple/SequenceSet.java
@@ -1,129 +1,82 @@
-/**\r
- * SequenceSet.java\r
- *\r
- * This file was auto-generated from WSDL\r
- * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.\r
- */\r
-\r
-/*\r
- * Jalview - A Sequence Alignment Editor and Viewer\r
- * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
- *\r
- * This program is free software; you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License\r
- * as published by the Free Software Foundation; either version 2\r
- * of the License, or (at your option) any later version.\r
- *\r
- * This program is distributed in the hope that it will be useful,\r
- * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
- * GNU General Public License for more details.\r
- *\r
- * You should have received a copy of the GNU General Public License\r
- * along with this program; if not, write to the Free Software\r
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
- */\r
-package vamsas.objects.simple;\r
-\r
-public class SequenceSet\r
-    implements java.io.Serializable\r
-{\r
-  private vamsas.objects.simple.Sequence[] seqs;\r
-  private java.lang.Object __equalsCalc = null;\r
-  private boolean __hashCodeCalc = false;\r
-\r
-  public SequenceSet()\r
-  {\r
-  }\r
-\r
-  public SequenceSet(vamsas.objects.simple.Sequence[] seqs)\r
-  {\r
-    this.seqs = seqs;\r
-  }\r
-\r
-  /**\r
-   * Gets the seqs value for this SequenceSet.\r
-   *\r
-   * @return seqs\r
-   */\r
-  public vamsas.objects.simple.Sequence[] getSeqs()\r
-  {\r
-    return seqs;\r
-  }\r
-\r
-  /**\r
-   * Sets the seqs value for this SequenceSet.\r
-   *\r
-   * @param seqs\r
-   */\r
-  public void setSeqs(vamsas.objects.simple.Sequence[] seqs)\r
-  {\r
-    this.seqs = seqs;\r
-  }\r
-\r
-  public synchronized boolean equals(java.lang.Object obj)\r
-  {\r
-    if (! (obj instanceof SequenceSet))\r
-    {\r
-      return false;\r
-    }\r
-\r
-    SequenceSet other = (SequenceSet) obj;\r
-\r
-    if (obj == null)\r
-    {\r
-      return false;\r
-    }\r
-\r
-    if (this == obj)\r
-    {\r
-      return true;\r
-    }\r
-\r
-    if (__equalsCalc != null)\r
-    {\r
-      return (__equalsCalc == obj);\r
-    }\r
-\r
-    __equalsCalc = obj;\r
-\r
-    boolean _equals;\r
-    _equals = true &&\r
-        ( ( (this.seqs == null) && (other.getSeqs() == null)) ||\r
-         ( (this.seqs != null) &&\r
-          java.util.Arrays.equals(this.seqs, other.getSeqs())));\r
-    __equalsCalc = null;\r
-\r
-    return _equals;\r
-  }\r
-\r
-  public synchronized int hashCode()\r
-  {\r
-    if (__hashCodeCalc)\r
-    {\r
-      return 0;\r
-    }\r
-\r
-    __hashCodeCalc = true;\r
-\r
-    int _hashCode = 1;\r
-\r
-    if (getSeqs() != null)\r
-    {\r
-      for (int i = 0; i < java.lang.reflect.Array.getLength(getSeqs());\r
-           i++)\r
-      {\r
-        java.lang.Object obj = java.lang.reflect.Array.get(getSeqs(), i);\r
-\r
-        if ( (obj != null) && !obj.getClass().isArray())\r
-        {\r
-          _hashCode += obj.hashCode();\r
-        }\r
-      }\r
-    }\r
-\r
-    __hashCodeCalc = false;\r
-\r
-    return _hashCode;\r
-  }\r
-}\r
+/**
+ * SequenceSet.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.
+ */
+
+package vamsas.objects.simple;
+
+public class SequenceSet  implements java.io.Serializable {
+    private vamsas.objects.simple.Sequence[] seqs;
+
+    public SequenceSet() {
+    }
+
+    public SequenceSet(
+           vamsas.objects.simple.Sequence[] seqs) {
+           this.seqs = seqs;
+    }
+
+
+    /**
+     * Gets the seqs value for this SequenceSet.
+     * 
+     * @return seqs
+     */
+    public vamsas.objects.simple.Sequence[] getSeqs() {
+        return seqs;
+    }
+
+
+    /**
+     * Sets the seqs value for this SequenceSet.
+     * 
+     * @param seqs
+     */
+    public void setSeqs(vamsas.objects.simple.Sequence[] seqs) {
+        this.seqs = seqs;
+    }
+
+    private java.lang.Object __equalsCalc = null;
+    public synchronized boolean equals(java.lang.Object obj) {
+        if (!(obj instanceof SequenceSet)) return false;
+        SequenceSet other = (SequenceSet) obj;
+        if (obj == null) return false;
+        if (this == obj) return true;
+        if (__equalsCalc != null) {
+            return (__equalsCalc == obj);
+        }
+        __equalsCalc = obj;
+        boolean _equals;
+        _equals = true && 
+            ((this.seqs==null && other.getSeqs()==null) || 
+             (this.seqs!=null &&
+              java.util.Arrays.equals(this.seqs, other.getSeqs())));
+        __equalsCalc = null;
+        return _equals;
+    }
+
+    private boolean __hashCodeCalc = false;
+    public synchronized int hashCode() {
+        if (__hashCodeCalc) {
+            return 0;
+        }
+        __hashCodeCalc = true;
+        int _hashCode = 1;
+        if (getSeqs() != null) {
+            for (int i=0;
+                 i<java.lang.reflect.Array.getLength(getSeqs());
+                 i++) {
+                java.lang.Object obj = java.lang.reflect.Array.get(getSeqs(), i);
+                if (obj != null &&
+                    !obj.getClass().isArray()) {
+                    _hashCode += obj.hashCode();
+                }
+            }
+        }
+        __hashCodeCalc = false;
+        return _hashCode;
+    }
+
+}