JAL-3032 upgrade to Jmol 14.29.17; clearing of src2 directory

[jalview.git] / src2 / fr / orsay / lri / varna / models / rna / ModeleStrand.java

diff --git a/src2/fr/orsay/lri/varna/models/rna/ModeleStrand.java b/src2/fr/orsay/lri/varna/models/rna/ModeleStrand.java
deleted file mode 100644 (file)
index 1af1454..0000000
--- a/src2/fr/orsay/lri/varna/models/rna/ModeleStrand.java
+++ /dev/null
@@ -1,79 +0,0 @@
-package fr.orsay.lri.varna.models.rna;
-
-import java.util.ArrayList;
-
-public class ModeleStrand {
-       
-       private ArrayList<ModeleBase> _strand = new ArrayList<ModeleBase>();
-       private boolean hasBeenPlaced = false;
-       private boolean strandLeft = false;
-       private boolean strandRight = false;
-       private int levelPosition;
-       
-       public ModeleStrand(){
-               
-       }
-       
-       public void addBase(ModeleBase mb){
-               this._strand.add(mb);
-       }
-       
-       public void addBase(int index, ModeleBase mb){
-               this._strand.add(index, mb);
-       }
-       
-       public int sizeStrand() {
-               return this._strand.size();
-       }
-       
-       public ModeleBase getMB(int a) {        
-               return this._strand.get(a);     
-       }
-       
-       public ArrayList<ModeleBase> getArrayListMB() { 
-               return this._strand;    
-       }
-       
-       public int getLevelPosition(){
-               return this.levelPosition;
-       }
-       
-       public void setLevelPosition(int a){
-               this.levelPosition=a;
-       }
-       
-       public boolean getStrandRight(){
-               return this.strandRight;
-       }
-       
-       public void setStrandRight(boolean bool){
-               this.strandRight=bool;
-       }
-       
-       public boolean getStrandLeft(){
-               return this.strandLeft;
-       }
-       
-       public void setStrandLeft(boolean bool){
-               this.strandLeft=bool;
-       }
-       
-       public boolean hasBeenPlaced(){
-               return this.hasBeenPlaced;
-       }
-       
-       public void setHasBeenPlaced(boolean bool){
-               this.hasBeenPlaced =bool;
-       }
-       
-       public boolean existInStrand(int a){
-               int size =sizeStrand();
-               boolean exist=false; 
-               for (int i=0; i<size;i++){
-                       if(a==this.getMB(i).getIndex()){
-                               exist=true;
-                       }
-               }
-               return exist;
-       }
-}
\ No newline at end of file