JAL-3032 upgrade to Jmol 14.29.17; clearing of src2 directory
[jalview.git] / src2 / fr / orsay / lri / varna / views / VueRNAList.java
diff --git a/src2/fr/orsay/lri/varna/views/VueRNAList.java b/src2/fr/orsay/lri/varna/views/VueRNAList.java
deleted file mode 100644 (file)
index 1fc7e28..0000000
+++ /dev/null
@@ -1,195 +0,0 @@
-package fr.orsay.lri.varna.views;
-
-
-import java.awt.BorderLayout;
-import java.awt.Color;
-import java.awt.Dimension;
-import java.awt.GridLayout;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.beans.PropertyChangeEvent;
-import java.beans.PropertyVetoException;
-import java.beans.VetoableChangeListener;
-import java.util.ArrayList;
-import java.util.Collection;
-import java.util.Vector;
-
-import javax.swing.JButton;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-import javax.swing.JScrollPane;
-import javax.swing.JTable;
-import javax.swing.event.TableModelEvent;
-import javax.swing.event.TableModelListener;
-import javax.swing.table.AbstractTableModel;
-import javax.swing.table.TableColumn;
-
-import fr.orsay.lri.varna.VARNAPanel;
-import fr.orsay.lri.varna.components.ColorRenderer;
-import fr.orsay.lri.varna.models.rna.ModeleBase;
-import fr.orsay.lri.varna.models.rna.ModeleBaseNucleotide;
-import fr.orsay.lri.varna.models.rna.ModeleColorMap;
-import fr.orsay.lri.varna.models.rna.RNA;
-
-public class VueRNAList extends JPanel implements TableModelListener, ActionListener {
-
-       private JTable table;
-       private ValueTableModel _tm;
-       private ArrayList<RNA> data;
-       private ArrayList<Object> columns;
-       private ArrayList<Boolean> included;
-       
-       
-       public VueRNAList( ArrayList<RNA> rnas)
-       {
-               super(new BorderLayout());
-               data = rnas;
-               init();
-       }
-       
-       public ArrayList<RNA> getSelectedRNAs()
-       {
-               ArrayList<RNA> result = new ArrayList<RNA>();
-               for (int i = 0; i < data.size(); i++)
-               {
-                       if (included.get(i))
-                       {
-                               result.add(data.get(i));
-                       }
-               }               
-               return result;
-       }
-       
-       private void init()
-       {
-               Object[] col = {"Num","Selected","Name","ID","Length"};
-               columns = new ArrayList<Object>();
-               for (int i = 0; i < col.length; i++)
-               {
-                       columns.add(col[i]);
-               }
-               included = new ArrayList<Boolean>();
-               for (int i = 0; i < data.size(); i++)
-               {
-                       included.add(new Boolean(true));
-               }
-               
-               
-               _tm = new ValueTableModel();
-               table = new JTable(_tm);
-               table.setDefaultRenderer(Color.class, new ColorRenderer(true)); 
-               table.setPreferredScrollableViewportSize(new Dimension(600, 300));
-               table.setAutoResizeMode(JTable.AUTO_RESIZE_OFF);
-               TableColumn c0 = table.getColumnModel().getColumn(0);
-               c0.setPreferredWidth(30);
-               TableColumn c1 = table.getColumnModel().getColumn(1);
-               c1.setPreferredWidth(30);
-               TableColumn c2 = table.getColumnModel().getColumn(2);
-               c2.setPreferredWidth(200);
-               TableColumn c3 = table.getColumnModel().getColumn(3);
-               c3.setPreferredWidth(200);
-               TableColumn c4 = table.getColumnModel().getColumn(4);
-               c4.setPreferredWidth(30);
-               table.setAutoResizeMode(JTable.AUTO_RESIZE_ALL_COLUMNS);
-               table.getModel().addTableModelListener(this);
-               
-               JScrollPane scrollPane = new JScrollPane(table);
-               this.add(scrollPane,BorderLayout.CENTER);
-               JPanel jp = new JPanel();
-               JPanel jpl = new JPanel();
-               JPanel jpr = new JPanel();
-               jp.setLayout(new BorderLayout());
-               jp.add(jpl,BorderLayout.WEST);
-               jp.add(jpr,BorderLayout.EAST);
-               jp.add(new JLabel("Please select which model(s) should be imported." ),BorderLayout.SOUTH);
-               JButton selectAll = new JButton("Select All");
-               selectAll.addActionListener(this);
-               selectAll.setActionCommand("all");
-               JButton deselectAll = new JButton("Deselect All");
-               deselectAll.addActionListener(this);
-               deselectAll.setActionCommand("none");
-               jpl.add(selectAll);
-               jpr.add(deselectAll);
-               
-               add(scrollPane,BorderLayout.CENTER);
-               add(jp,BorderLayout.SOUTH);
-               }
-       
-
-
-       private class ValueTableModel extends AbstractTableModel {
-           public String getColumnName(int col) {
-               return columns.get(col).toString();
-           }
-           public int getRowCount() { return data.size(); }
-           public int getColumnCount() { return columns.size(); }
-           public Object getValueAt(int row, int col) {
-               RNA r = data.get(row);
-               if (col==0)
-               {
-                       return new Integer(row+1);
-               }
-               else if (col==1)
-               {
-                       return new Boolean(included.get(row));
-               }
-               else if (col==2)
-               {
-                       return new String(r.getName());
-               } 
-               else if (col==3)
-               {
-                       return new String(r.getID());
-               } 
-               else if (col==4)
-               {
-                       return new Integer(r.getSize());
-               } 
-               return "N/A";
-           }
-           public boolean isCellEditable(int row, int col)
-               { 
-                       if (col==1) 
-                               return true;
-                       return false;
-               }
-           public void setValueAt(Object value, int row, int col) {
-               if (col==1)
-               {
-                 included.set(row, (Boolean)value);
-                 fireTableCellUpdated(row, col);
-               }
-           }
-           public Class getColumnClass(int c) {
-               return getValueAt(0, c).getClass();
-           }
-       }
-
-       public void tableChanged(TableModelEvent e) {
-               if (e.getType() == TableModelEvent.UPDATE)
-               {
-                       table.repaint();
-               }
-               
-       }
-
-       public void actionPerformed(ActionEvent e) {
-               if (e.getActionCommand().equals("none"))
-               {
-                       for(int i=0;i<this.included.size();i++)
-                       {
-                               included.set(i, false);
-                       }
-                       _tm.fireTableRowsUpdated(0, included.size()-1);
-               }
-               else if (e.getActionCommand().equals("all"))
-               {
-                       for(int i=0;i<this.included.size();i++)
-                       {
-                               included.set(i, true);
-                       }
-                       _tm.fireTableRowsUpdated(0, included.size()-1);
-               }
-       }
-
-}