Merge branch 'Jalview-JS/develop' into develop

[jalview.git] / srcjar / fr / orsay / lri / varna / applications / fragseq / FragSeqRNASecStrModel.java

diff --git a/srcjar/fr/orsay/lri/varna/applications/fragseq/FragSeqRNASecStrModel.java b/srcjar/fr/orsay/lri/varna/applications/fragseq/FragSeqRNASecStrModel.java
new file mode 100644 (file)
index 0000000..6c3c6f2
--- /dev/null
+++ b/srcjar/fr/orsay/lri/varna/applications/fragseq/FragSeqRNASecStrModel.java
@@ -0,0 +1,51 @@
+package fr.orsay.lri.varna.applications.fragseq;
+
+import java.awt.datatransfer.DataFlavor;
+import java.awt.datatransfer.Transferable;
+import java.awt.datatransfer.UnsupportedFlavorException;
+import java.io.File;
+import java.io.FileFilter;
+import java.io.FileNotFoundException;
+import java.io.FilenameFilter;
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.Collection;
+import java.util.Date;
+import java.util.regex.Pattern;
+
+import fr.orsay.lri.varna.exceptions.ExceptionExportFailed;
+import fr.orsay.lri.varna.exceptions.ExceptionFileFormatOrSyntax;
+import fr.orsay.lri.varna.exceptions.ExceptionLoadingFailed;
+import fr.orsay.lri.varna.exceptions.ExceptionPermissionDenied;
+import fr.orsay.lri.varna.exceptions.ExceptionUnmatchedClosingParentheses;
+import fr.orsay.lri.varna.factories.RNAFactory;
+import fr.orsay.lri.varna.models.rna.RNA;
+
+public class FragSeqRNASecStrModel extends FragSeqModel {
+ 
+       private RNA _r =null;
+       
+  public FragSeqRNASecStrModel(RNA r)
+  {
+       _r = r;
+  }
+
+
+  public String toString()
+  {
+         return _r.getName();
+  }
+  
+  public String getID()
+  {
+         return _r.getID();
+  }
+  
+
+  public RNA getRNA()
+  {
+         return _r;
+  }
+  public static DataFlavor Flavor = new DataFlavor(FragSeqRNASecStrModel.class, "RNA Sec Str Object");
+
+}