Merge branch 'Jalview-JS/develop' into develop

[jalview.git] / srcjar / fr / orsay / lri / varna / models / naView / Base.java

diff --git a/srcjar/fr/orsay/lri/varna/models/naView/Base.java b/srcjar/fr/orsay/lri/varna/models/naView/Base.java
new file mode 100644 (file)
index 0000000..bb8e0f8
--- /dev/null
+++ b/srcjar/fr/orsay/lri/varna/models/naView/Base.java
@@ -0,0 +1,66 @@
+/*
+ VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases.
+ Copyright (C) 2008  Kevin Darty, Alain Denise and Yann Ponty.
+ electronic mail : Yann.Ponty@lri.fr
+ paper mail : LRI, bat 490 Université Paris-Sud 91405 Orsay Cedex France
+
+ This file is part of VARNA version 3.1.
+ VARNA version 3.1 is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
+ as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+
+ VARNA version 3.1 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
+ without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+ See the GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License along with VARNA version 3.1.
+ If not, see http://www.gnu.org/licenses.
+ */
+package fr.orsay.lri.varna.models.naView;
+
+public class Base {
+       private int mate;
+       private double x, y;
+       private boolean extracted;
+       private Region region = new Region();
+
+       public int getMate() {
+               return mate;
+       }
+
+       public void setMate(int mate) {
+               this.mate = mate;
+       }
+
+       public double getX() {
+               return x;
+       }
+
+       public void setX(double x) {
+               //System.out.println("  Base.setX()");
+               this.x = x;
+       }
+
+       public double getY() {
+               return y;
+       }
+
+       public void setY(double y) {
+               this.y = y;
+       }
+
+       public boolean isExtracted() {
+               return extracted;
+       }
+
+       public void setExtracted(boolean extracted) {
+               this.extracted = extracted;
+       }
+
+       public Region getRegion() {
+               return region;
+       }
+
+       public void setRegion(Region region) {
+               this.region = region;
+       }
+}