JAL-3210 Barebones gradle/buildship/eclipse. See README

[jalview.git] / srcjar / fr / orsay / lri / varna / models / rna / ModeleBackbone.java

diff --git a/srcjar/fr/orsay/lri/varna/models/rna/ModeleBackbone.java b/srcjar/fr/orsay/lri/varna/models/rna/ModeleBackbone.java
deleted file mode 100644 (file)
index caa4b5f..0000000
--- a/srcjar/fr/orsay/lri/varna/models/rna/ModeleBackbone.java
+++ /dev/null
@@ -1,75 +0,0 @@
-package fr.orsay.lri.varna.models.rna;
-
-import java.awt.Color;
-import java.io.Serializable;
-import java.util.ArrayList;
-import java.util.Hashtable;
-
-import javax.xml.transform.sax.TransformerHandler;
-
-import org.xml.sax.SAXException;
-import org.xml.sax.helpers.AttributesImpl;
-
-import fr.orsay.lri.varna.models.rna.ModeleBackboneElement.BackboneType;
-import fr.orsay.lri.varna.utils.XMLUtils;
-
-public class ModeleBackbone  implements Serializable{
-
-       /**
-        * 
-        */
-       private Hashtable<Integer,ModeleBackboneElement> elems = new Hashtable<Integer,ModeleBackboneElement>();
-       
-       private static final long serialVersionUID = -614968737102943216L;
-
-       
-       
-       public static String XML_ELEMENT_NAME = "backbone";
-       
-       public void toXML(TransformerHandler hd) throws SAXException
-       {
-               AttributesImpl atts = new AttributesImpl();
-               hd.startElement("","",XML_ELEMENT_NAME,atts);
-               for (ModeleBackboneElement bck:elems.values())
-               {
-                       bck.toXML(hd);
-               }
-               hd.endElement("","",XML_ELEMENT_NAME);
-               atts.clear();
-       }
-
-       public void addElement(ModeleBackboneElement mbe)
-       {
-               elems.put(mbe.getIndex(),mbe);
-       }
-
-        public BackboneType getTypeBefore(int indexBase)
-        {
-                return getTypeAfter(indexBase-1);
-        }
-       
-        public BackboneType getTypeAfter(int indexBase)
-        {
-                if (elems.containsKey(indexBase))
-                        return elems.get(indexBase).getType();
-                else
-                        return BackboneType.SOLID_TYPE;
-        }
-
-        public Color getColorBefore(int indexBase, Color defCol)
-        {
-                return getColorAfter(indexBase-1,defCol);
-        }
-       
-        public Color getColorAfter(int indexBase, Color defCol)
-        {
-                if (elems.containsKey(indexBase))
-                {
-                        Color c = elems.get(indexBase).getColor();
-                        if (c != null)
-                                return c;
-                }
-                return defCol;
-        }
-        
-}