JAL-3541 selectively merged build.gradle and gradle.properties

[jalview.git] / srcjar / fr / orsay / lri / varna / models / treealign / TreeAlignResult.java

diff --git a/srcjar/fr/orsay/lri/varna/models/treealign/TreeAlignResult.java b/srcjar/fr/orsay/lri/varna/models/treealign/TreeAlignResult.java
new file mode 100644 (file)
index 0000000..f8ff988
--- /dev/null
+++ b/srcjar/fr/orsay/lri/varna/models/treealign/TreeAlignResult.java
@@ -0,0 +1,27 @@
+package fr.orsay.lri.varna.models.treealign;
+
+
+/**
+ * The result of aligning a tree T1 with a tree T2.
+ * On the resulting tree, each node has a value
+ * of type AlignedNode<original value type>.
+ * @author Raphael Champeimont
+ */
+public class TreeAlignResult<ValueType1, ValueType2> {
+       private Tree<AlignedNode<ValueType1, ValueType2>> alignment;
+       private double distance;
+       
+       public Tree<AlignedNode<ValueType1, ValueType2>> getAlignment() {
+               return alignment;
+       }
+       public void setAlignment(Tree<AlignedNode<ValueType1, ValueType2>> alignment) {
+               this.alignment = alignment;
+       }
+       public double getDistance() {
+               return distance;
+       }
+       public void setDistance(double distance) {
+               this.distance = distance;
+       }
+
+}