+++ /dev/null
-/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- */
-package MCview;
-
-import static org.testng.AssertJUnit.assertEquals;
-
-import jalview.gui.JvOptionPane;
-
-import org.testng.Assert;
-import org.testng.annotations.BeforeClass;
-import org.testng.annotations.Test;
-
-public class AtomTest
-{
-
- @BeforeClass(alwaysRun = true)
- public void setUpJvOptionPane()
- {
- JvOptionPane.setInteractiveMode(false);
- JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
- }
-
- /**
- * Test the constructor that parses a PDB file format ATOM line. Fields are in
- * fixed column positions
- */
- @Test(groups = { "Functional" })
- public void testStringConstructor()
- {
- Atom a = new Atom(
- "ATOM 349 NE2 GLN A 48 22.290 8.595 17.680 1.00 14.30 N");
- assertEquals(349, a.atomIndex);
- assertEquals("NE", a.name);
- assertEquals("GLN", a.resName);
- assertEquals("A", a.chain);
- assertEquals(48, a.resNumber);
- assertEquals("48", a.resNumIns);
- assertEquals(' ', a.insCode);
- assertEquals(22.290, a.x, 0.00001);
- assertEquals(8.595, a.y, 0.00001);
- assertEquals(17.680, a.z, 0.00001);
- assertEquals(1f, a.occupancy, 0.00001);
- assertEquals(14.3, a.tfactor, 0.00001);
- }
-
- /**
- * Test the case where occupancy and temp factor are blank - should default to
- * 1
- */
- @Test(groups = { "Functional" })
- public void testStringConstructor_blankOccupancyTempFactor()
- {
- Atom a = new Atom(
- "ATOM 349 NE2 GLN A 48 22.290 8.595 17.680 N");
- assertEquals(1f, a.occupancy, 0.00001);
- assertEquals(1f, a.tfactor, 0.00001);
- }
-
- /**
- * Parsing non-numeric data as Atom throws an exception
- */
- @Test(groups = { "Functional" })
- public void testStringConstructor_malformed()
- {
- try
- {
- new Atom(
- "ATOM 34N NE2 GLN A 48 22.290 8.595 17.680 1.00 14.30 N");
- Assert.fail("Expected exception");
- } catch (NumberFormatException e)
- {
- // expected
- }
- }
-}