JAL-1645 source formatting and organise imports

[jalview.git] / test / jalview / analysis / AAFrequencyTest.java

diff --git a/test/jalview/analysis/AAFrequencyTest.java b/test/jalview/analysis/AAFrequencyTest.java
index 77d592a..828cc76 100644 (file)
--- a/test/jalview/analysis/AAFrequencyTest.java
+++ b/test/jalview/analysis/AAFrequencyTest.java
@@ -1,5 +1,5 @@
-
 package jalview.analysis;
+
 import static org.testng.AssertJUnit.assertEquals;
 import static org.testng.AssertJUnit.assertNull;
 
@@ -22,17 +22,16 @@ public class AAFrequencyTest
 
   private static final String P = AAFrequency.PROFILE;
 
-  @Test(groups ={ "Functional" })
+  @Test(groups = { "Functional" })
   public void testCalculate_noProfile()
   {
     SequenceI seq1 = new Sequence("Seq1", "CAGT");
     SequenceI seq2 = new Sequence("Seq2", "CACT");
     SequenceI seq3 = new Sequence("Seq3", "C--G");
     SequenceI seq4 = new Sequence("Seq4", "CA-t");
-    SequenceI[] seqs = new SequenceI[]
-    { seq1, seq2, seq3, seq4 };
+    SequenceI[] seqs = new SequenceI[] { seq1, seq2, seq3, seq4 };
     Hashtable[] result = new Hashtable[seq1.getLength()];
-    
+
     AAFrequency.calculate(seqs, 0, seq1.getLength(), result, false);
 
     // col 0 is 100% C
@@ -65,15 +64,14 @@ public class AAFrequencyTest
     assertEquals("T", col.get(R));
   }
 
-  @Test(groups ={ "Functional" })
+  @Test(groups = { "Functional" })
   public void testCalculate_withProfile()
   {
     SequenceI seq1 = new Sequence("Seq1", "CAGT");
     SequenceI seq2 = new Sequence("Seq2", "CACT");
     SequenceI seq3 = new Sequence("Seq3", "C--G");
     SequenceI seq4 = new Sequence("Seq4", "CA-t");
-    SequenceI[] seqs = new SequenceI[]
-    { seq1, seq2, seq3, seq4 };
+    SequenceI[] seqs = new SequenceI[] { seq1, seq2, seq3, seq4 };
     Hashtable[] result = new Hashtable[seq1.getLength()];
 
     AAFrequency.calculate(seqs, 0, seq1.getLength(), result, true);
@@ -100,15 +98,14 @@ public class AAFrequencyTest
     assertEquals(4, profile[1][1]);
   }
 
-  @Test(groups ={ "Functional" })
+  @Test(groups = { "Functional" })
   public void testCalculate_withProfileTiming()
   {
     SequenceI seq1 = new Sequence("Seq1", "CAGT");
     SequenceI seq2 = new Sequence("Seq2", "CACT");
     SequenceI seq3 = new Sequence("Seq3", "C--G");
     SequenceI seq4 = new Sequence("Seq4", "CA-t");
-    SequenceI[] seqs = new SequenceI[]
-    { seq1, seq2, seq3, seq4 };
+    SequenceI[] seqs = new SequenceI[] { seq1, seq2, seq3, seq4 };
     Hashtable[] result = new Hashtable[seq1.getLength()];
 
     // ensure class loaded and initialized
@@ -122,7 +119,7 @@ public class AAFrequencyTest
     System.out.println(System.currentTimeMillis() - start);
   }
 
-  @Test(groups ={ "Functional" })
+  @Test(groups = { "Functional" })
   public void testGetPercentageFormat()
   {
     assertNull(AAFrequency.getPercentageFormat(0));