JAL-3438 spotless for 2.11.2.0

[jalview.git] / test / jalview / analysis / AlignmentAnnotationUtilsTest.java

diff --git a/test/jalview/analysis/AlignmentAnnotationUtilsTest.java b/test/jalview/analysis/AlignmentAnnotationUtilsTest.java
index 4692fe4..cdb950e 100644 (file)
--- a/test/jalview/analysis/AlignmentAnnotationUtilsTest.java
+++ b/test/jalview/analysis/AlignmentAnnotationUtilsTest.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -28,7 +28,9 @@ import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.Annotation;
 import jalview.datamodel.SequenceI;
-import jalview.io.AppletFormatAdapter;
+import jalview.gui.JvOptionPane;
+import jalview.io.DataSourceType;
+import jalview.io.FileFormat;
 
 import java.io.IOException;
 import java.util.ArrayList;
@@ -38,11 +40,20 @@ import java.util.HashMap;
 import java.util.List;
 import java.util.Map;
 
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.BeforeMethod;
 import org.testng.annotations.Test;
 
 public class AlignmentAnnotationUtilsTest
 {
+
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   // 4 sequences x 13 positions
   final static String EOL = "\n";
 
@@ -142,7 +153,7 @@ public class AlignmentAnnotationUtilsTest
   public void setUp() throws IOException
   {
     alignment = new jalview.io.FormatAdapter().readFile(TEST_DATA,
-            AppletFormatAdapter.PASTE, "FASTA");
+            DataSourceType.PASTE, FileFormat.Fasta);
 
     AlignmentAnnotation[] anns = new AlignmentAnnotation[SEQ_ANN_COUNT];
     for (int i = 0; i < anns.length; i++)
@@ -398,9 +409,8 @@ public class AlignmentAnnotationUtilsTest
     anns[4].graphGroup = -1;
     anns[4].visible = true;
 
-    BitSet result = AlignmentAnnotationUtils
-            .getVisibleLineGraphGroups(AlignmentAnnotationUtils
-                    .asList(anns));
+    BitSet result = AlignmentAnnotationUtils.getVisibleLineGraphGroups(
+            AlignmentAnnotationUtils.asList(anns));
     assertTrue(result.get(5));
     assertFalse(result.get(0));
     assertFalse(result.get(1));