Merge branch 'develop' into documentation/JAL-2325_release2101

[jalview.git] / test / jalview / analysis / AlignmentUtilsTests.java

diff --git a/test/jalview/analysis/AlignmentUtilsTests.java b/test/jalview/analysis/AlignmentUtilsTests.java
index 4aed7e7..449514a 100644 (file)
--- a/test/jalview/analysis/AlignmentUtilsTests.java
+++ b/test/jalview/analysis/AlignmentUtilsTests.java
@@ -35,8 +35,8 @@ import jalview.datamodel.AlignmentI;
 import jalview.datamodel.Annotation;
 import jalview.datamodel.DBRefEntry;
 import jalview.datamodel.Mapping;
-import jalview.datamodel.SearchResults;
-import jalview.datamodel.SearchResults.Match;
+import jalview.datamodel.SearchResultMatchI;
+import jalview.datamodel.SearchResultsI;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
@@ -1119,9 +1119,9 @@ public class AlignmentUtilsTests
     assertEquals(1, mappings.size());
 
     // map G to GGG
-    SearchResults sr = MappingUtils.buildSearchResults(pep1, 1, mappings);
+    SearchResultsI sr = MappingUtils.buildSearchResults(pep1, 1, mappings);
     assertEquals(1, sr.getResults().size());
-    Match m = sr.getResults().get(0);
+    SearchResultMatchI m = sr.getResults().get(0);
     assertSame(cds1Dss, m.getSequence());
     assertEquals(1, m.getStart());
     assertEquals(3, m.getEnd());
@@ -1650,10 +1650,10 @@ public class AlignmentUtilsTests
     List<AlignedCodonFrame> pep1CdsMappings = MappingUtils
             .findMappingsForSequence(cds.getSequenceAt(0), pep1Mappings);
     assertEquals(1, pep1CdsMappings.size());
-    SearchResults sr = MappingUtils.buildSearchResults(pep1, 1,
+    SearchResultsI sr = MappingUtils.buildSearchResults(pep1, 1,
             pep1CdsMappings);
     assertEquals(1, sr.getResults().size());
-    Match m = sr.getResults().get(0);
+    SearchResultMatchI m = sr.getResults().get(0);
     assertEquals(cds.getSequenceAt(0).getDatasetSequence(), m.getSequence());
     assertEquals(1, m.getStart());
     assertEquals(3, m.getEnd());
@@ -2388,9 +2388,9 @@ public class AlignmentUtilsTests
     assertEquals(1, mappings.size());
 
     // map G to GGG
-    SearchResults sr = MappingUtils.buildSearchResults(pep3, 1, mappings);
+    SearchResultsI sr = MappingUtils.buildSearchResults(pep3, 1, mappings);
     assertEquals(1, sr.getResults().size());
-    Match m = sr.getResults().get(0);
+    SearchResultMatchI m = sr.getResults().get(0);
     assertSame(cds.getSequenceAt(0).getDatasetSequence(), m.getSequence());
     assertEquals(1, m.getStart());
     assertEquals(3, m.getEnd());