merge of SIFTs Branch

[jalview.git] / test / jalview / analysis / AlignmentUtilsTests.java

diff --git a/test/jalview/analysis/AlignmentUtilsTests.java b/test/jalview/analysis/AlignmentUtilsTests.java
index 84b9817..74e4940 100644 (file)
--- a/test/jalview/analysis/AlignmentUtilsTests.java
+++ b/test/jalview/analysis/AlignmentUtilsTests.java
@@ -988,7 +988,7 @@ public class AlignmentUtilsTests
     assertTrue(AlignmentUtils.haveCrossRef(seq2, seq1));
 
     // now the other way round
-    seq1.setDBRef(null);
+    seq1.setDBRefs(null);
     seq2.addDBRef(new DBRefEntry("EMBL", "1", "A12345"));
     assertTrue(AlignmentUtils.haveCrossRef(seq1, seq2));
     assertTrue(AlignmentUtils.haveCrossRef(seq2, seq1));
@@ -1124,8 +1124,8 @@ public class AlignmentUtilsTests
 
     assertEquals("GGGTTT", exon.getSequenceAsString());
     assertEquals("dna1|A12345", exon.getName());
-    assertEquals(1, exon.getDBRef().length);
-    DBRefEntry cdsRef = exon.getDBRef()[0];
+    assertEquals(1, exon.getDBRefs().length);
+    DBRefEntry cdsRef = exon.getDBRefs()[0];
     assertEquals("EMBLCDS", cdsRef.getSource());
     assertEquals("2", cdsRef.getVersion());
     assertEquals("A12345", cdsRef.getAccessionId());
@@ -1195,8 +1195,8 @@ public class AlignmentUtilsTests
     SequenceI exon = exons.get(0);
     assertEquals("GGGTTT", exon.getSequenceAsString());
     assertEquals("dna1|A12345", exon.getName());
-    assertEquals(1, exon.getDBRef().length);
-    DBRefEntry cdsRef = exon.getDBRef()[0];
+    assertEquals(1, exon.getDBRefs().length);
+    DBRefEntry cdsRef = exon.getDBRefs()[0];
     assertEquals("EMBLCDS", cdsRef.getSource());
     assertEquals("2", cdsRef.getVersion());
     assertEquals("A12345", cdsRef.getAccessionId());
@@ -1204,8 +1204,8 @@ public class AlignmentUtilsTests
     exon = exons.get(1);
     assertEquals("aaaccc", exon.getSequenceAsString());
     assertEquals("dna1|A12346", exon.getName());
-    assertEquals(1, exon.getDBRef().length);
-    cdsRef = exon.getDBRef()[0];
+    assertEquals(1, exon.getDBRefs().length);
+    cdsRef = exon.getDBRefs()[0];
     assertEquals("EMBLCDS", cdsRef.getSource());
     assertEquals("3", cdsRef.getVersion());
     assertEquals("A12346", cdsRef.getAccessionId());
@@ -1213,8 +1213,8 @@ public class AlignmentUtilsTests
     exon = exons.get(2);
     assertEquals("aaaTTT", exon.getSequenceAsString());
     assertEquals("dna1|A12347", exon.getName());
-    assertEquals(1, exon.getDBRef().length);
-    cdsRef = exon.getDBRef()[0];
+    assertEquals(1, exon.getDBRefs().length);
+    cdsRef = exon.getDBRefs()[0];
     assertEquals("EMBLCDS", cdsRef.getSource());
     assertEquals("4", cdsRef.getVersion());
     assertEquals("A12347", cdsRef.getAccessionId());