seqs.add(new Sequence("seq3", "VG-Y"));
seqs.add(new Sequence("seq4", "VGNW"));
- Conservation cons = new Conservation("", 3, seqs, 0, 50);
+ Conservation cons = new Conservation("", seqs, 0, 50);
int[] counts = cons.countConservationAndGaps(0);
assertEquals(counts[0], 1); // conserved
assertEquals(counts[1], 1); // gap count