JAL-1264 fix broken applet build dependencies

[jalview.git] / test / jalview / analysis / CrossRefTest.java

diff --git a/test/jalview/analysis/CrossRefTest.java b/test/jalview/analysis/CrossRefTest.java
deleted file mode 100644 (file)
index 2ae4afc..0000000
--- a/test/jalview/analysis/CrossRefTest.java
+++ /dev/null
@@ -1,72 +0,0 @@
-package jalview.analysis;
-
-import static org.junit.Assert.assertFalse;
-import static org.junit.Assert.assertTrue;
-import jalview.datamodel.DBRefEntry;
-import jalview.datamodel.Sequence;
-import jalview.datamodel.SequenceI;
-
-import org.junit.Test;
-
-public class CrossRefTest
-{
-
-  /**
-   * Tests for the method that checks if one sequence cross-references another
-   */
-  @Test
-  public void testHasCrossRef()
-  {
-    assertFalse(CrossRef.hasCrossRef(null, null));
-    SequenceI seq1 = new Sequence("EMBL|A12345", "ABCDEF");
-    assertFalse(CrossRef.hasCrossRef(seq1, null));
-    assertFalse(CrossRef.hasCrossRef(null, seq1));
-    SequenceI seq2 = new Sequence("UNIPROT|V20192", "ABCDEF");
-    assertFalse(CrossRef.hasCrossRef(seq1, seq2));
-
-    // different ref
-    seq1.addDBRef(new DBRefEntry("UNIPROT", "1", "v20193"));
-    assertFalse(CrossRef.hasCrossRef(seq1, seq2));
-
-    // case-insensitive; version number is ignored
-    seq1.addDBRef(new DBRefEntry("UNIPROT", "1", "v20192"));
-    assertTrue(CrossRef.hasCrossRef(seq1, seq2));
-
-    // right case!
-    seq1.addDBRef(new DBRefEntry("UNIPROT", "1", "V20192"));
-    assertTrue(CrossRef.hasCrossRef(seq1, seq2));
-    // test is one-way only
-    assertFalse(CrossRef.hasCrossRef(seq2, seq1));
-  }
-
-  /**
-   * Tests for the method that checks if either sequence cross-references the
-   * other
-   */
-  @Test
-  public void testHaveCrossRef()
-  {
-    assertFalse(CrossRef.hasCrossRef(null, null));
-    SequenceI seq1 = new Sequence("EMBL|A12345", "ABCDEF");
-    assertFalse(CrossRef.haveCrossRef(seq1, null));
-    assertFalse(CrossRef.haveCrossRef(null, seq1));
-    SequenceI seq2 = new Sequence("UNIPROT|V20192", "ABCDEF");
-    assertFalse(CrossRef.haveCrossRef(seq1, seq2));
-
-    seq1.addDBRef(new DBRefEntry("UNIPROT", "1", "V20192"));
-    assertTrue(CrossRef.haveCrossRef(seq1, seq2));
-    // next is true for haveCrossRef, false for hasCrossRef
-    assertTrue(CrossRef.haveCrossRef(seq2, seq1));
-
-    // now the other way round
-    seq1.setDBRef(null);
-    seq2.addDBRef(new DBRefEntry("EMBL", "1", "A12345"));
-    assertTrue(CrossRef.haveCrossRef(seq1, seq2));
-    assertTrue(CrossRef.haveCrossRef(seq2, seq1));
-
-    // now both ways
-    seq1.addDBRef(new DBRefEntry("UNIPROT", "1", "V20192"));
-    assertTrue(CrossRef.haveCrossRef(seq1, seq2));
-    assertTrue(CrossRef.haveCrossRef(seq2, seq1));
-  }
-}