JAL-3130 JAL-1889 reportCurrentWorkingDirectory test to report absolute path when...

[jalview.git] / test / jalview / bin / CommandLineOperations.java

diff --git a/test/jalview/bin/CommandLineOperations.java b/test/jalview/bin/CommandLineOperations.java
index 1761261..cb08563 100644 (file)
--- a/test/jalview/bin/CommandLineOperations.java
+++ b/test/jalview/bin/CommandLineOperations.java
@@ -29,6 +29,8 @@ import java.io.BufferedReader;
 import java.io.File;
 import java.io.IOException;
 import java.io.InputStreamReader;
+import java.nio.file.Path;
+import java.nio.file.Paths;
 import java.util.ArrayList;
 
 import org.testng.Assert;
@@ -194,6 +196,21 @@ public class CommandLineOperations
     return worker;
   }
 
+  @Test(groups = { "Functional" })
+  public void reportCurrentWorkingDirectory()
+  {
+    try
+    {
+      Path currentRelativePath = Paths.get("");
+      String s = currentRelativePath.toAbsolutePath().toString();
+      System.out.println("Test CWD is " + s);
+      System.err.println("Test CWD is " + s);
+    } catch (Exception q)
+    {
+      q.printStackTrace();
+    }
+  }
+
   @BeforeTest(alwaysRun = true)
   public void initialize()
   {
@@ -314,53 +331,58 @@ public class CommandLineOperations
   @DataProvider(name = "headlessModeOutputOperationsData")
   public static Object[][] getHeadlessModeOutputParams()
   {
+    // JBPNote: I'm not clear why need to specify full path for output file
+    // when running tests on build server, but we will keep this patch for now
+    // since it works.
+    // https://issues.jalview.org/browse/JAL-1889?focusedCommentId=21609&page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#comment-21609
+    String workingDir = "test/jalview/bin/";
     return new Object[][] { { "nodisplay -open examples/uniref50.fa",
-        " -eps", "test/jalview/bin/test_uniref50_out.eps", true,
+        " -eps", workingDir + "test_uniref50_out.eps", true,
         MINFILESIZE_BIG, TEST_TIMEOUT },
         { "nodisplay -open examples/uniref50.fa", " -eps",
-            "test/jalview/bin/test_uniref50_out.eps", false,
+            workingDir + "test_uniref50_out.eps", false,
             MINFILESIZE_BIG, TEST_TIMEOUT },
         { "nogui -open examples/uniref50.fa", " -eps",
-            "test/jalview/bin/test_uniref50_out.eps", true, MINFILESIZE_BIG,
+            workingDir + "test_uniref50_out.eps", true, MINFILESIZE_BIG,
             TEST_TIMEOUT },
         { "nogui -open examples/uniref50.fa", " -eps",
-            "test/jalview/bin/test_uniref50_out.eps", false,
+            workingDir + "test_uniref50_out.eps", false,
             MINFILESIZE_BIG, TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -eps",
-            "test/jalview/bin/test_uniref50_out.eps", true, MINFILESIZE_BIG,
+            workingDir + "test_uniref50_out.eps", true, MINFILESIZE_BIG,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -svg",
-            "test/jalview/bin/test_uniref50_out.svg", false,
+            workingDir + "test_uniref50_out.svg", false,
             MINFILESIZE_BIG, TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -png",
-            "test/jalview/bin/test_uniref50_out.png", true, MINFILESIZE_BIG,
+            workingDir + "test_uniref50_out.png", true, MINFILESIZE_BIG,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -html",
-            "test/jalview/bin/test_uniref50_out.html", true,
+            workingDir + "test_uniref50_out.html", true,
             MINFILESIZE_BIG, TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -fasta",
-            "test_uniref50_out.mfa", true, MINFILESIZE_SMALL,
+            workingDir + "test_uniref50_out.mfa", true, MINFILESIZE_SMALL,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -clustal",
-            "test_uniref50_out.aln", true, MINFILESIZE_SMALL,
+            workingDir + "test_uniref50_out.aln", true, MINFILESIZE_SMALL,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -msf",
-            "test_uniref50_out.msf", true, MINFILESIZE_SMALL,
+            workingDir + "test_uniref50_out.msf", true, MINFILESIZE_SMALL,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -pileup",
-            "test_uniref50_out.aln", true, MINFILESIZE_SMALL,
+            workingDir + "test_uniref50_out.aln", true, MINFILESIZE_SMALL,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -pir",
-            "test_uniref50_out.pir", true, MINFILESIZE_SMALL,
+            workingDir + "test_uniref50_out.pir", true, MINFILESIZE_SMALL,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -pfam",
-            "test_uniref50_out.pfam", true, MINFILESIZE_SMALL,
+            workingDir + "test_uniref50_out.pfam", true, MINFILESIZE_SMALL,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -blc",
-            "test_uniref50_out.blc", true, MINFILESIZE_SMALL,
+            workingDir + "test_uniref50_out.blc", true, MINFILESIZE_SMALL,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -jalview",
-            "test_uniref50_out.jvp", true, MINFILESIZE_SMALL,
+            workingDir + "test_uniref50_out.jvp", true, MINFILESIZE_SMALL,
             TEST_TIMEOUT }, };
   }
 }