rec.setAlignmentStart(start);
CigarParser cp = new CigarParser('-');
- String bfresult = cp.parseCigarToSequence(rec, insertions, 1, null);
+ Sequence dummy = new Sequence("dummy","");
+ String bfresult = cp.parseCigarToSequence(rec, insertions, 1, dummy);
System.out.println(result);
System.out.println(bfresult);