JAL-3130 Lots of deprecation fixes. See utils/deprecation_auto_fixes.sh for commands...

[jalview.git] / test / jalview / datamodel / ColumnSelectionTest.java

diff --git a/test/jalview/datamodel/ColumnSelectionTest.java b/test/jalview/datamodel/ColumnSelectionTest.java
index c594dda..aefcbc0 100644 (file)
--- a/test/jalview/datamodel/ColumnSelectionTest.java
+++ b/test/jalview/datamodel/ColumnSelectionTest.java
@@ -103,8 +103,8 @@ public class ColumnSelectionTest
     cs.removeElement(1);
     List<Integer> sel = cs.getSelected();
     assertEquals(2, sel.size());
-    assertEquals(new Integer(2), sel.get(0));
-    assertEquals(new Integer(5), sel.get(1));
+    assertEquals(Integer.valueOf(2), sel.get(0));
+    assertEquals(Integer.valueOf(5), sel.get(1));
 
     // removing an element in the list removes it
     cs.removeElement(2);
@@ -112,7 +112,7 @@ public class ColumnSelectionTest
     assertEquals(1, sel.size());
     sel = cs.getSelected();
     assertEquals(1, sel.size());
-    assertEquals(new Integer(5), sel.get(0));
+    assertEquals(Integer.valueOf(5), sel.get(0));
   }
 
   /**
@@ -713,5 +713,17 @@ public class ColumnSelectionTest
     assertEquals(2, added);
     assertTrue(cs.contains(1));
     assertTrue(cs.contains(4));
+
+    /*
+     * select < 1f or Helix; one annotation matches both
+     * return value should only count it once
+     */
+    filter.setThresholdType(ThresholdType.BELOW_THRESHOLD);
+    filter.setThresholdValue(1f);
+    added = cs
+            .filterAnnotations(new Annotation[]
+            { null, helix, sheet, turn, ann4 }, filter);
+    assertEquals(1, added);
+    assertTrue(cs.contains(1));
   }
 }