* trite test of the intersectVisContigs method for a simple DNA -> Protein
* exon map and a range of visContigs
*/
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void testIntersectVisContigs()
{
- MapList fk = new MapList(new int[]
- { 1, 6, 8, 13, 15, 23 }, new int[]
- { 1, 7 }, 3, 1);
+ MapList fk = new MapList(new int[] { 1, 6, 8, 13, 15, 23 }, new int[] {
+ 1, 7 }, 3, 1);
Mapping m = new Mapping(fk);
- Mapping m_1 = m.intersectVisContigs(new int[]
- { fk.getFromLowest(), fk.getFromHighest() });
- Mapping m_2 = m.intersectVisContigs(new int[]
- { 1, 7, 11, 20 });
+ Mapping m_1 = m.intersectVisContigs(new int[] { fk.getFromLowest(),
+ fk.getFromHighest() });
+ Mapping m_2 = m.intersectVisContigs(new int[] { 1, 7, 11, 20 });
// assertions from output values 'as is', not checked for correctness
- String result = Arrays.deepToString(m_1.map.getFromRanges()
- .toArray());
+ String result = Arrays.deepToString(m_1.map.getFromRanges().toArray());
System.out.println(result);
assertEquals("[[1, 6], [8, 13], [15, 23]]", result);