assertTrue(m.adjacent(seq1, 6, 8));
assertTrue(m.adjacent(seq1, 5, 8));
assertTrue(m.adjacent(seq1, 0, 1));
-
-
+
assertFalse(m.adjacent(seq2, 3, 3));
assertFalse(m.adjacent(null, 3, 3));
}
@Test(groups = { "Functional" })
public void testAppendResult()
{
- SequenceI seq1 = new Sequence("", "abcdefghijklm"),seq2=new Sequence("","defdefdefdef");
+ SequenceI seq1 = new Sequence("", "abcdefghijklm"),
+ seq2 = new Sequence("", "defdefdefdef");
SearchResultsI sr = new SearchResults();
sr.appendResult(seq1, 3, 5);
assertEquals(1, sr.getCount());
assertTrue(sr.appendResult(seq2, 7, 49));
assertTrue(sr.appendResult(seq2, 0, 30));
assertEquals(2, sr.getCount());
- int c=0;
- for (SearchResultMatchI sre: sr.getResults())
+ int c = 0;
+ for (SearchResultMatchI sre : sr.getResults())
{
c++;
}
- assertEquals(c,2);
-
+ assertEquals(c, 2);
+
}
+
/**
* Test for method that checks if search results matches a sequence region
*/