JAL-2505 correct handling of change of feature type

[jalview.git] / test / jalview / datamodel / SequenceFeatureTest.java

diff --git a/test/jalview/datamodel/SequenceFeatureTest.java b/test/jalview/datamodel/SequenceFeatureTest.java
index d105cc5..fbeb365 100644 (file)
--- a/test/jalview/datamodel/SequenceFeatureTest.java
+++ b/test/jalview/datamodel/SequenceFeatureTest.java
@@ -42,7 +42,7 @@ public class SequenceFeatureTest
   }
 
   @Test(groups = { "Functional" })
-  public void testCopyConstructor()
+  public void testCopyConstructors()
   {
     SequenceFeature sf1 = new SequenceFeature("type", "desc", 22, 33,
             12.5f, "group");
@@ -56,10 +56,41 @@ public class SequenceFeatureTest
     assertEquals("desc", sf2.getDescription());
     assertEquals(22, sf2.getBegin());
     assertEquals(33, sf2.getEnd());
+    assertEquals(12.5f, sf2.getScore());
     assertEquals("+", sf2.getValue("STRAND"));
     assertEquals("Testing", sf2.getValue("Note"));
     // shallow clone of otherDetails map - contains the same object values!
     assertSame(count, sf2.getValue("Count"));
+
+    /*
+     * copy constructor modifying begin/end/group/score
+     */
+    SequenceFeature sf3 = new SequenceFeature(sf1, 11, 14, "group2", 17.4f);
+    assertEquals("type", sf3.getType());
+    assertEquals("desc", sf3.getDescription());
+    assertEquals(11, sf3.getBegin());
+    assertEquals(14, sf3.getEnd());
+    assertEquals(17.4f, sf3.getScore());
+    assertEquals("+", sf3.getValue("STRAND"));
+    assertEquals("Testing", sf3.getValue("Note"));
+    // shallow clone of otherDetails map - contains the same object values!
+    assertSame(count, sf3.getValue("Count"));
+
+    /*
+     * copy constructor modifying type/begin/end/group/score
+     */
+    SequenceFeature sf4 = new SequenceFeature(sf1, "Disulfide bond", 12,
+            15, "group3", -9.1f);
+    assertEquals("Disulfide bond", sf4.getType());
+    assertTrue(sf4.isContactFeature());
+    assertEquals("desc", sf4.getDescription());
+    assertEquals(12, sf4.getBegin());
+    assertEquals(15, sf4.getEnd());
+    assertEquals(-9.1f, sf4.getScore());
+    assertEquals("+", sf4.getValue("STRAND"));
+    assertEquals("Testing", sf4.getValue("Note"));
+    // shallow clone of otherDetails map - contains the same object values!
+    assertSame(count, sf4.getValue("Count"));
   }
 
   /**