overlaps = fs.findOverlappingFeatures(12, 16);
assertEquals(overlaps.size(), 3);
- assertEquals(overlaps.get(0).getEnd(), 20);
+ // BH note, this is reversed from IS-NCList 2 1 0, not 0 1 2
+ assertEquals(overlaps.get(2).getEnd(), 20);
assertEquals(overlaps.get(1).getEnd(), 20);
- assertEquals(overlaps.get(2).getEnd(), 25);
+ assertEquals(overlaps.get(0).getEnd(), 25);
overlaps = fs.findOverlappingFeatures(33, 33);
assertEquals(overlaps.size(), 1);