JAL-2112 optimisation of EMBL CDS parsing

[jalview.git] / test / jalview / datamodel / xdb / embl / EmblEntryTest.java

diff --git a/test/jalview/datamodel/xdb/embl/EmblEntryTest.java b/test/jalview/datamodel/xdb/embl/EmblEntryTest.java
index e8760bd..3de5e3f 100644 (file)
--- a/test/jalview/datamodel/xdb/embl/EmblEntryTest.java
+++ b/test/jalview/datamodel/xdb/embl/EmblEntryTest.java
@@ -3,6 +3,7 @@ package jalview.datamodel.xdb.embl;
 import static org.testng.AssertJUnit.assertEquals;
 import static org.testng.AssertJUnit.assertSame;
 
+import jalview.analysis.SequenceIdMatcher;
 import jalview.datamodel.DBRefEntry;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceI;
@@ -37,6 +38,7 @@ public class EmblEntryTest
     // not the whole sequence but enough for this test...
     SequenceI dna = new Sequence("J03321", "GGATCCGTAAGTTAGACGAAATT");
     List<SequenceI> peptides = new ArrayList<SequenceI>();
+    SequenceIdMatcher matcher = new SequenceIdMatcher(peptides);
     EmblFile ef = EmblTestHelper.getEmblFile();
 
     /*
@@ -48,7 +50,7 @@ public class EmblEntryTest
     {
       if ("CDS".equals(feature.getName()))
       {
-        testee.parseCodingFeature(feature, "EMBL", dna, peptides);
+        testee.parseCodingFeature(feature, "EMBL", dna, peptides, matcher);
       }
     }